Eucalyptus grandis (rose gum): 104425489
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Entry
104425489 CDS
T03547
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104425489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
egr03036
]
104425489
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
104425489
SWR1 complex
104425489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
HDA2-3
Myb_DNA-bind_6
DBINO
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
104425489
NCBI-ProteinID:
XP_039161669
LinkDB
All DBs
Position
11:23176072..23188301
Genome browser
AA seq
2053 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPQRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVAIRASKGMLDQATREEKKMKEGEQRLRKVALNISKDVKKFWMKIEKLVLYKHQLEVD
EKRKKALDKQLEFLLGQTERYSTMLAENLTDAHITLQQNTIEEHQPSISPEDDDENLTNE
GMELDAVYYAESHPEAANVDEDFSLQTEDESEDDEQTIEEDEALITEEERKEELEALHNE
MDVPLEELLKQYAADRDDRDSPGGSEDAAQQNSDENDQNECVQKDISAAGETNKDSSVVV
TGRRCAESNGSLSVPKSLVSDMEVCKTESSSKILENDKDHAHYDFIEEQEDGDYVLAGGE
DKDDEATLLEEEELAKADSYDPMDEIALLQRESEIPVEELIARYKKDIENDAVSEDESEY
ASALSEDLEDAAGPKYEVPYRESMSESDGELHANLSDSSPGKEAEAGELNESEGRENDSR
IADAAAAARSAQPTGNTFSTTKVRTKFPFLIKHPLREYQHIGLDWLVTMYEKRLNGILAD
EMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWSPAFKILTYFGSAK
ERKFKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL
NFHSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVDGQEKVNK
EVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVINCRLSRRQRNLYEDFIASSETQATLA
SSNFFGMISVIMQLRKVCNHPDLFEGRPIISSFDMSGIVTHLSSSVCSILSTGPFSGVDL
EGLGFLFTHLDFHMTSWESDEVRSIETPSDLIINRVDLNNQNEDWYCPRRDRKRSHQTNI
FEEIQKALWEERLREAKERVASISWWNSLRCRRRPMYSTSLRDIVTIKHPVYDIHCQKAD
RSSYLYPSKLADIVLSPVERFERMTDLVESFMFAIPAARAPEPVCRCSKNDTPVFLHPSY
GEKCSQILLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAMLLRKLKSEGHRALIFT
QMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGIN
LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILRKANQKRAL
DDLVIQSGGYNTEFFKKLDPMELFSGHRTLPLKQKEKNVSNGSEVSLSNADVEAALKHAE
DEADYMALKKVEQEEAVDNQEFTEEAVGKMEDDEFVNEDDLKDDEPTDQGGQISTLNKEE
ALISGSDFNEDGALTLVGKEDDLDMLADVKQMAAAAAAAGQAVSSFENQLRPIDRYAMRF
LELWDPIIDKRAVESQVRFEETEWELDRLEKYKEELEADMDDDEEPLVYEKWDADFATEA
YRQQVEALAQHQLEEELELEAKLKEDLDNENYEDKVERPRASKPKSKKKAKKAKFKSLKK
GSLTSDGKQFKGESPEESIYSDDDIVCLDISDGELPHSAMQKKRKKDELFEDPDEETSSK
KSKKHDPPGNSVDLDCKPSGKKQEESVDSKTLDYMDVDREQKTVGRSRMGGKISITSLPI
KRVFTIRPEKLKKGNIWSRDCVPSPDMWLPQEDAVLCAVVHEYGFNWSLVADTLYGMTAG
GFYRGRYRNPIHCCERFRDLIQRYVLSAVDNPNNEKAGHVVSTKGSLKVTEDNIRMLLDV
AMDLPDNELLLQKHFTALLSSVWRVTSCVNDQENLSSPRNGLYFSRSILDSAINHSSRKS
RPEAAGKVKMTNLIPSRKLMADALDAVGHQNEIVCPSDQGDGVSAIEEGLEVTLEFQQEK
DDLTIPLPTFLKLSLPGSVPSTSGSNSTGDKFLKSSRNMAECRFREASRACAEGSLGCST
SGLLATDVKTRSAQKPQALGKHKLPPTDSIKPSKSKFRKTNMEFGLTNQPVSEPRPLPMQ
MVSAGDASAWCDFSSATFDAGAHDFEGDLLSAMDKELPLEPESYDMVQNTYYVPDVISDL
DDCSLSPEYTDIG
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaaggtccaaggtcgaaattggatcacgagacgagagctcggcgccaaaag
gcactcgaagcccctcgagagcctcaacgccctaaaactcactgggatcatgttttagaa
gagatggtctggctgtcaaaggattttgagtctgagcgtaaatggaaactagctcaagca
aagaaggttgccataagagcaagcaaaggcatgttagaccaggctaccagggaagaaaag
aaaatgaaggaaggggaacaaagattgagaaaagttgctcttaatatttcaaaggatgtg
aagaagttctggatgaaaatagaaaagctggtgctttacaagcatcagctggaggttgat
gagaaaaggaagaaggcacttgataagcagcttgagtttttattgggccaaactgagagg
tactcaacaatgctggcagaaaatctcacagatgcacatataactttgcaacaaaatact
atcgaggagcatcagccaagtatttcacctgaggatgatgatgagaatttgactaatgag
gggatggaactagatgctgtctattatgcagaatctcatccagaagcggcaaatgttgat
gaagattttagtctacaaaccgaagatgagtcggaggatgatgagcaaactattgaggaa
gatgaggctctcataacagaagaagaaaggaaagaagaattggaagccttgcacaatgaa
atggatgttccactggaggagttacttaaacaatatgctgcggacagagatgatagagat
agtccaggaggaagtgaagatgcggctcagcaaaattcagacgagaatgatcagaatgag
tgtgtacagaaggatatttctgctgctggcgagacaaataaagacagctctgttgtagta
actggtcgtcgttgtgctgaaagtaatggcagcttaagtgtaccgaaaagccttgtttct
gatatggaggtctgcaaaaccgaaagtagttccaaaattttggagaatgacaaagatcat
gcgcattatgactttattgaagaacaggaagatggtgattatgtcctcgctggtggagag
gacaaggatgatgaagcgaccttgttagaagaggaggaattggcaaaagcagattcatat
gatccgatggatgagattgctttactgcagagggagagcgagattcctgttgaagaatta
attgccaggtataagaaggacattgaaaatgatgctgtctcagaggatgaatctgaatat
gcctctgctttatctgaagatcttgaagatgctgcaggccccaagtatgaggtaccatat
agggaaagcatgtctgaaagtgatggtgaacttcatgcaaatttgtcagactcttctcct
ggaaaagaagcagaagccggagaacttaatgaatcagaaggcagggagaatgatagtaga
attgcagatgccgcagcagctgcaagatctgcccagcccacaggcaacacattctcaaca
accaaagtgcgcacaaagttcccctttcttatcaagcacccactacgtgagtaccaacat
attggcttggattggcttgttacaatgtatgagaaaagactgaatgggattttagctgat
gaaatgggtcttggaaagactatcatgaccattgcactacttgcacatcttgcttgtgag
aagggaatatggggcccacacctaattgtagttccaacaagtgtgatgctaaactgggaa
actgagtttctaaaatggtctcctgctttcaaaatcttaacttattttggaagtgcaaaa
gaaaggaaatttaagagacagggttggctgaaacccaactccttccatgtgtgcataacc
acttacaggctagttatacaggattccaaagtcttcaagcggaagaaatggaagtactta
attttggatgaggctcatctaattaagaattggaagtctcagaggtggcagactctctta
aacttccactccaagaggcgcattttgttaactggcacgcctctgcagaatgatcttatg
gaattgtggtctcttatgcactttttaatgcctcacatctttcaatctcatcaagagttt
aaggattggttctgtaatccgatttcaggaatggttgatggacaggaaaaggtaaataaa
gaagttgttgatcgcctgcataatgttctccgtccatttatactccgcaggttaaaaagg
gatgtggagaagcagcttccaatgaagcatgagcatgtcataaactgtagactttcaagg
agacagcggaatttgtatgaggatttcattgctagctctgagacacaagctactcttgca
agttcaaatttctttggaatgatcagtgttataatgcaacttcgtaaagtatgcaaccat
cctgatttgtttgagggccgtccaatcattagttcctttgacatgagtggcattgttacc
catttgagttcatctgtatgctccattttatctactggacccttctctggagtggacctt
gagggattggggtttttgtttactcatcttgattttcacatgacatcttgggagagtgat
gaagttagatccattgaaactccatcggacctaatcataaacagggttgatctgaataac
cagaatgaagattggtattgtcctagaagagaccggaagaggtcacatcaaacaaatata
ttcgaagagatccaaaaggcattatgggaggagagattacgagaagcgaaagaacgtgtt
gcttctatttcttggtggaattcattgagatgccggaggagacccatgtactcaacatca
ctgagagacatagttacaatcaagcacccagtttatgatattcattgtcaaaaggctgat
cggtcatcctatttatatccatcaaagcttgctgacatagttctttcaccagtagaacga
tttgagaggatgactgacttggtggagagttttatgtttgcaattccagcagcacgggcc
ccagaacctgtttgccggtgcagtaaaaatgacactcctgtcttcctgcacccaagttat
ggggaaaagtgctctcagatcttattgcctcttctatcacccattagaccagctattgtt
cgcaggcaagtatactttcccgacaggcgactcatacaatttgattgtgggaagttgcag
gagctggcgatgttgcttaggaagttgaaatctgaaggtcaccgggctttgatttttacc
caaatgaccaagatgcttgatgtgttggaagcttttataaatttgtatggctatacctac
atgcgattagacggctccacccaaccagaggagaggcaaactttgatgcagcgctttaat
acaaacccaaaaattttcctttttattttgtcaacccgtagtggaggggttggtattaac
ctagtaggtgcagatactgttattttctatgatagcgactggaatccagcaatggatcaa
caagcacaagatcgatgccacaggattggacaaactcgtgaggtacacatctataggcta
attagtgagagcaccattgaggagaatatattaaggaaagcaaatcaaaagcgggctctt
gatgatctggtcatacagagtggaggttacaataccgaattcttcaagaagctcgatcct
atggaattattttcaggtcacaggactcttcccttgaagcagaaggaaaagaatgttagc
aatggaagtgaggtttctttgtcaaatgcagatgttgaagctgctttaaaacatgctgaa
gatgaagcagattacatggcacttaagaaagttgaacaggaagaggctgtagacaatcag
gagttcacagaagaagcggttggcaaaatggaagacgatgagtttgtaaacgaggatgat
ctcaaagatgatgagcccacagatcagggtggccaaatatcgactctaaacaaggaggag
gcactgattagtggaagtgattttaatgaagatggagctctcactcttgttggcaaggaa
gatgatttggatatgctggctgatgttaaacagatggcagcagctgcagctgcagcagga
caggcagtttcatcttttgagaatcaattacgcccaatcgatcgctatgcgatgcggttt
ttggaattatgggaccctatcatagacaagagagctgtggaatctcaggtaaggtttgag
gagactgaatgggaactagaccgtctagagaagtacaaggaggagctggaagctgacatg
gatgatgatgaagaacctcttgtatatgaaaagtgggatgctgattttgcaactgaggcg
taccgacagcaagttgaggcattggctcaacatcagttggaggaggagctggaattggaa
gcaaaattgaaggaagatttggataatgaaaattacgaagataaggttgagcgtcctagg
gcctccaagccgaagtcaaagaagaaagcgaaaaaggccaagtttaagtccctgaagaaa
gggtcattgacttctgatggaaaacaattcaaaggcgaatctccggaagaatccatatac
tcagatgatgacattgtttgccttgacatttcagatggagaattgcctcattcagctatg
cagaagaaacgtaagaaggatgagctttttgaggaccctgatgaagagacttcttccaag
aagtccaagaaacatgaccctcctggaaattctgtagatttggattgcaagccatctggt
aaaaagcaggaggaatctgtagactcgaaaacactagattacatggatgttgaccgcgag
cagaaaacagtcggcaggagccggatgggaggaaaaatctccattacatcattgccaata
aagagggtttttacgataagaccggagaagttaaagaaaggaaatatctggtctagagat
tgtgttccatcgcctgatatgtggttaccacaagaggatgcagtattatgtgctgtagtg
catgaatatggttttaactggagcctggttgccgatacactatatgggatgactgctggt
ggattttatcggggaagatatcgaaaccctattcactgttgcgagaggtttagggacctt
attcagaggtatgttttatctgctgtggacaaccctaacaatgaaaaggctggccatgtg
gtctccacaaaaggttctcttaaagtgacagaggataacattcgaatgctgctagatgtt
gccatggatttaccagataatgagttactccttcagaagcacttcactgctttgctctca
tcggtatggagggtgacatcttgtgttaatgaccaagagaatctctcatctcccagaaat
ggcttgtactttagtagaagcattcttgattctgctatcaaccattcttcacggaaatcc
agacctgaagctgcggggaaggttaaaatgactaatttgattccgagtaggaagttaatg
gcagatgcactagatgctgttggtcatcagaatgagattgtgtgcccctctgaccaggga
gatggagtttcagctattgaagaaggtttggaagtcaccctcgaattccagcaggagaaa
gatgatttgaccattccattgccaacctttctgaagctatcgctacctggctcggttcca
tcaacttctggaagcaattctactggagacaaatttttaaaatcatctaggaacatggca
gaatgtcgtttcagggaagcgtcgagagcttgtgctgaaggaagtcttggttgctcgacc
tctggtctcttagcaactgatgtcaagacccgatcagcacagaagccacaggctctggga
aagcacaagcttcccccaactgactcaatcaagccctctaagtcgaagttcaggaaaaca
aacatggagtttggcctcactaaccagccagtttctgagccacggcccctgccgatgcag
atggtatcagctggagatgcgagtgcatggtgcgatttttctagtgccacttttgatgct
ggggctcatgacttcgagggtgacttgctttcggcgatggacaaagagcttcccttggaa
ccagagagctatgatatggttcaaaatacctactacgttcctgatgtaatctcagaccta
gatgattgttccttgtcgccggaatatactgatattggctag
DBGET
integrated database retrieval system
