Eucalyptus grandis (rose gum): 104425567
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Entry
104425567 CDS
T03547
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104425567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104425567
03012 Translation factors [BR:
egr03012
]
104425567
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104425567
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104425567
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104425567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
T2SSE
Rad17
ATPase
Motif
Other DBs
NCBI-GeneID:
104425567
NCBI-ProteinID:
XP_010036592
LinkDB
All DBs
Position
11:25926907..25935591
Genome browser
AA seq
852 aa
AA seq
DB search
MSSETQRLVGELLVGSSVSVGSSSFPSRQGGKQVLPAGNIEKSVSVLEIDSAKEKLNAEL
LAKQEKMKDSANVKAMQSFREKLPAFKVKAEFLKAIANNQVLVVSGETGCGKTTQLPQFI
LEEEISSLHGADCSIMCTQPRRISAISVAARISSERGEALGETVGYQIRLESKSSAETRL
LFCTTGVLLRRLAQDPKLTGVSHLLVDEIHERGINEDFLLIILRDLIPRRPDLRVILMSA
TINADLFSKYFGNAPTLHIPGLTFPVAELFLEDVLEKTHYIIKSEFDNIQGNSRRRRKQQ
DSKKDHLTELFEDVDIDSHYRSYGRSTRESLEAWSGSLIDLGLVESTLEYICRHEGDGAI
LVFLTGWDDISKLLDKVKVNHLLGDQSRVLVLPLHGSMPTVNQREIFDRPPPGKRKIVLA
TNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGV
CYKLYPRIVHDAMPQFQLPEILRTPLQELCLHIKSLQLGAIGSFLSKALQPPDHLAVQNA
IELLKTIGALDDKEDLTPLGRHLCTLPVDPNIGKMLLMGSIFQCLTPALIIAAALAYRDP
FVLPINKKEEADEAKRSFAGDSCSDHIALLKAFEGWKEAKRSGNERSFCWENYLSPVTLQ
MMDDMRMQFLNLLSDIGFVDKSKGPSAYNLYSNDLEMVCAILCAGLYPNVVQCKRRGKRT
AFYTKEVGQVDIHPASVNAGIHQFPLPYLIYSEKVKTTSIFIRDSTNISDYALLLFGGNL
VPSKSGEGIEMLDGYLHFSASKSVLELIRKLRGELDKLLNRKIEEPGLDISSEGKGVVAA
AVELLHSQNVQY
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagaaacccagagacttgttggagagcttttagttggttcctcagtatctgtt
ggcagctcctctttcccatctaggcaggggggtaaacaagtattgccagctggaaatata
gagaaatctgtttcagtattggagatcgattctgctaaggagaaacttaacgctgaactt
ttggctaagcaagaaaagatgaaggatagcgccaatgtcaaggcaatgcagtctttccgc
gaaaaacttcctgcatttaaagtgaaagctgagttcctaaaagctattgcgaataatcag
gtactagtagtatctggagagacaggttgtggtaagactacacagctccctcagttcatt
ctggaagaggagatatcttctcttcacggagctgactgcagcataatgtgtacacaacca
cgtcgtatatctgccatatctgttgctgctcgaatatcttctgaaaggggagaggcactt
ggtgaaactgttggatatcagatccgtctggaaagtaagtcttctgcagaaacaaggctg
ctattttgcaccactggagtactacttagacgactggctcaagacccgaaattgactggt
gtaagccacttgcttgtggatgaaatacatgaaagaggcattaacgaagactttctgttg
ataattctgcgtgaccttattccaaggcgtcccgatttacgggttattctgatgagtgca
accattaatgctgacttgttttccaaatattttggaaatgctcccactttgcatataccg
gggttgactttccctgtggcagagttgttcctagaagatgtgttggagaaaactcattac
attataaagtccgagtttgataatattcagggaaattcaaggaggaggaggaagcagcaa
gattctaagaaagatcatttgactgaactttttgaggacgtcgacattgattctcattat
agaagctacggcagatcaacaagagagtctcttgaagcttggtctggttcactgattgat
ttgggtctggtggagtcaactcttgaatatatatgtcgccacgaaggtgatggagccatt
cttgtatttctcactggatgggatgacatttcaaagctgcttgacaaggttaaagttaac
catctgcttggggatcagagcagggttcttgtccttcctttacatggttccatgcctact
gttaatcaacgggaaatatttgaccgtcctccgccaggtaagaggaagattgtgctggca
acaaacattgcagagagtagtattacaatagatgatgttgtttatgttgttgattgtgga
aaggcaaaggaaactagttatgatgctctgaacaagctggcttgtcttttaccatcctgg
atttcaaaggcctcagcacatcagaggagaggacgtgctggacgtgtgcaaccgggagtt
tgttataagctttatccaagaatcgttcatgacgcaatgccccagtttcaacttccagaa
attctccggactcctctacaagaactttgccttcacattaagagcttgcaacttggtgca
ataggatcatttttgtccaaggcacttcagccacctgaccatcttgctgttcaaaatgct
atcgaactgctaaaaacaataggggctctcgatgataaggaggatcttactccactcggc
cgtcacctctgtactttacctgtggatccaaatatcgggaagatgcttttgatggggtcc
atatttcaatgtctgactcctgccctaatcattgctgctgctctcgcttaccgtgaccca
tttgtccttccaataaataagaaagaggaagctgatgaagcaaaaagatcctttgccggt
gattcctgcagtgaccacatagcacttctgaaagcttttgaagggtggaaagaggcaaaa
cgaagtgggaacgaaagatcattctgctgggaaaactacttgtccccagtgaccttgcag
atgatggatgacatgagaatgcagttcctgaatctcctttctgatattggctttgtagac
aaatcaaagggccctagtgcatacaatctttatagcaatgatttggagatggtatgtgca
attctctgtgctgggctttacccaaatgttgttcagtgcaaaagaagaggaaagcggaca
gcattttacactaaagaagttggtcaagtggacattcacccagcatctgtcaatgcaggc
atccatcaattccccctgccatacttgatatacagcgaaaaggtgaaaactaccagcatt
tttatccgagactccacaaatatatcagattacgctttacttctttttggcggaaacctt
gttcccagcaaaagtggggagggtattgaaatgcttgatggctaccttcacttctctgca
tcaaagagtgtgctggagttgatacggaaattgagaggggagctggacaagcttctgaat
aggaagattgaagaacctggcctggacatttccagtgagggaaaaggggtggtggcggct
gcagtagagttgcttcacagtcagaatgtacagtactaa
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