KEGG   Eucalyptus grandis (rose gum): 104426234
Entry
104426234         CDS       T03547                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03082  ATP-dependent chromatin remodeling
egr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104426234
   03083 Polycomb repressive complex
    104426234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:egr03036]
    104426234
Enzymes [BR:egr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104426234
Chromosome and associated proteins [BR:egr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     104426234
   HDAC complexes
    Sin3A-HDAC complex
     104426234
    BRAF-HDAC complex
     104426234
    REST complex
     104426234
    SHIP complex
     104426234
    MiDAC complex
     104426234
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     104426234
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104426234
  Chromatin remodeling factors
   NuRD complex
    104426234
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 104426234
NCBI-ProteinID: XP_010037525
LinkDB
Position
11:34376864..34381378
AA seq 470 aa
MVESSGGASLPSVGQDARKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYLHR
RMEISRPFPAATTDIRRFHSEDYVTFISSVTPETVSDPAFSRQLKRFNVGEDCPVFDGIF
GFCQASAGGSMGAAVKLNRGDSDIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
KRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGSGHIKDTGAGPGKNYALNVP
LNDGIDDESFRGMFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
LRSFNVPLMVLGGGGYTMRNVARCWCYETAVAVGVEPENDLPYNEYYEYFGPDYTLHVEP
CSMENLNAPKDLERIRNMLLEQLSRIPHAPSVPFQMTPPITQEPEEAEEDMDERPKPRIW
NGEDYESDAEEDKSQHRSSNADALHDENVEMRDSVGENSGDKTREDRSPS
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggtcgagagcagcggcggcgcgtcgctgccgtcggtggggcaggacgcgcggaagcgg
cgcgtgagctacttctacgagccgacgatcggcgactactactacgggcaggggcacccg
atgaagccccacaggatccggatggcgcacaacctcatcgtccactactacctgcaccgc
cgcatggagatcagccgccccttccccgccgccaccaccgacatccgccgcttccactct
gaggactacgtcaccttcatctcctccgtcacccccgagaccgtctccgacccggccttc
tcccgccaactcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcatcttc
gggttctgccaggcctccgccggcggttccatgggcgccgccgtcaagctcaaccgcggc
gactccgacatcgccctcaattgggccggcgggctgcatcacgccaagaagtccgaggct
tctgggttttgctatgtcaacgatatcgtgcttgggattctcgagctcctcaaggtccac
aagcgtgttctctacgtggatatcgatgttcaccatggggatggggtggaggaggcattt
tatacgacggatagagtcatgaccgtatctttccataagtttggggacttcttccctgga
agcgggcacattaaggacaccggggcagggcctgggaagaactacgccctcaatgtgcca
ctgaatgatggcatagatgatgaaagtttccgtggtatgtttcgccccattatccaaaag
gttatggaagtatatcaaccggatgccgttgttcttcagtgtggggcagattcactgtct
ggagaccgattgggatgcttcaatttgtctgtgaaaggtcatgcagattgcctccgtttt
ctaagatcttttaacgttcctttaatggtcttgggtgggggaggttatacaatgagaaat
gtcgctcgttgctggtgttacgagacagctgttgcggtgggagtagaacctgaaaatgac
ttgccttacaatgagtattacgagtactttggcccagattatactcttcatgtcgagcca
tgtagcatggagaatcttaatgcaccaaaagatttggagagaatcaggaatatgttatta
gagcagctatcgagaatcccacatgcaccaagtgtaccttttcaaatgacaccgcccatt
acacaagagccagaagaggcagaggaagatatggatgaaaggccaaagccacgcatttgg
aatggtgaggattatgaatcggatgctgaagaagacaagagtcagcatagatcatcaaat
gctgatgctttgcatgatgaaaatgttgaaatgagggacagtgttggtgaaaacagtggg
gacaaaacaagggaagatcgttctccatcttga

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