Eucalyptus grandis (rose gum): 104426931
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Entry
104426931 CDS
T03547
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104426931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
egr03009
]
104426931
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
104426931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Utp13
WD40_Gbeta
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_Nup120_160
WD_LRWD1
WD40_RFWD3
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_WDR75_2nd
Beta-prop_ACSF4
Beta-prop_NOL10_N
Nucleoporin_N
Beta-prop_Vps41
Cytochrom_D1
Beta-prop_RIG_1st
Nbas_N
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
104426931
NCBI-ProteinID:
XP_039160051
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Position
11:complement(155648..163930)
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AA seq
888 aa
AA seq
DB search
MAAAAASLPFKKNYRSSQALQQFYAGGPFAVSSDGSFIACNCGDSIKIVDSSNASLRSSI
DCGSDTITALSLSPDGKLLFSAGHSRQIRVWDLSTSTCLRSWKGHDGPVMSMACHVSGGL
LATGGADRKVMVWDVDGGFCTHFFKGHDGVVSIVLFHPDSNRSLLFSGSDDGTIRVWDLL
AKKCASTLRGHDSTVTSLAFSEDGLTLLAAGRDKVVSLWDLHNYACKKTIPMYEVLESVC
VIHSGTVLASQLGLDDQLKVTKESAQNIHFITVGERGILRIWKSEGSVCLFKQEHSDVTV
ISDEDDSRSGFTAAVMLPLDQGLLCVTADQQFLFYYPEKHPEGIFSLTLCRRLVGYNEEI
VDMKFLGEEENFLAVATNLEQVRVYELASMSCSYVLAGHTETVLCLDTCISSSGRTLIVT
GSKDNSVRLWDSESRHCIGVGVGHMGAVGAVAFSRKRQDFFVSGSSDRTLKVWSLDGISE
DGVDSTNLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHK
RGIWSVEFSPVDQCVLTASGDKTVKIWAISDGSCLKTFEGHVSSVLRASFLTRGTQFVSC
GADGLVKLWTVRTNECIATYDQHSDKVWALAVGKKTEMLATGGSDAVVNLWYDSTASDKE
DAFRKEEEGVLKGQELENAVSDADYTKAIELALELRRPHKLFELFSELCRMREVGDRVER
ILSALSGEEVCLLLEYIREWNAKPKLCHVAQSVLSQVFRILSPTEIVEIKGIGELLEGLI
PYSQRHFSRIDRLVRSTYLLDYTLTGMSVIEPEADRSAVNDGSPDKSGLEKLEDGLLGEN
VGEEKIQNKEELESSAYKKRKLPRSKDRSKKKSKNVVYADAAAISFRA
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcgtccctgccgttcaagaagaactacaggagctcccaggcgctg
cagcagttctacgccggcggccctttcgccgtctcgtccgacggctccttcatcgcttgc
aactgtggtgactccatcaagatcgtcgattcctccaacgcctccctaaggtcctccatc
gactgcggctccgacaccatcaccgccctctccctcagccccgacggcaagttgctcttc
tccgccggccacagccgccagattagggtttgggacttgtccacctccacctgcctgcgc
tcctggaaggggcatgatggtccggtgatgagcatggcctgccacgtctctgggggtttg
ctggcgacgggaggagctgataggaaagtcatggtgtgggacgtcgacggtggtttctgc
acccatttcttcaaaggtcacgacggcgtcgttagcattgtcctcttccatcccgactcg
aatcgctctcttctgttctctggaagtgatgatggaactatacgggtttgggatctcctg
gcaaagaagtgtgcttcgacactgagaggacatgattcaacagtcacttctctggctttt
tccgaggatggcttgacattgcttgccgctggaagagataaggttgtatctttgtgggac
cttcataattatgcctgcaagaagaccatacctatgtatgaggtgcttgaatctgtatgc
gtgatacatagtggaactgttttggcttcacaactggggttagacgatcagctgaaagtg
acaaaagaaagtgcacagaatattcactttattactgttggtgaacgcggcattttacgg
atatggaaatctgaaggttcagtttgcctgtttaagcaagaacattctgatgtaactgtc
atctcagatgaggacgactcaaggagtggcttcactgctgctgtcatgctacccttggat
caaggattgctatgcgtgacagctgatcaacagtttttattctattatccagagaaacat
cctgaagggatattttcgctgaccctatgtagaagacttgtaggctacaatgaggaaata
gttgatatgaagttcctaggagaggaggaaaatttccttgctgttgctactaatcttgaa
caggtacgggtttatgaacttgcttccatgtcatgttcgtacgtcttggctggtcatact
gaaactgtcctgtgccttgacacttgtatttcaagttctggaaggacgcttattgtcacg
ggaagtaaggacaactctgttaggttgtgggattcagaaagcagacattgcattggagtt
ggagtaggtcacatgggcgctgtaggtgcagttgctttctcaaggaagagacaagatttt
tttgttagtggcagcagcgatcgtacacttaaggtttggagcttggatggcatctcagag
gatggtgtagactcaacaaatttgaaagcaaaagctgttgtggcagctcatgataaagat
attaattctgttgctgttgcaccaaatgacagtttagtttgttctggttctcaggatcgc
acagcttgtgtttggaggcttccagacctggtatctgtagttgtacttaaagggcacaag
agggggatttggtctgtagagttttcaccagttgatcaatgtgtgctcactgcatctggc
gataaaacggtgaagatatgggccatatctgatggttcttgcttaaagacctttgaaggg
catgtctctagtgtactaagagcatcatttctcacccgtgggacgcagtttgtttcttgt
ggtgctgatggcttggtaaaactgtggactgttaggacaaatgaatgcattgctacatat
gatcaacatagcgataaggtatgggctttggctgttggaaagaagactgaaatgcttgct
acaggtggcagtgatgctgttgtaaatctctggtacgattcaactgcttctgacaaagag
gatgcttttcgtaaagaggaagaaggtgttttgaaaggtcaagagttagaaaatgcagta
tctgatgctgactacaccaaggcaatcgaacttgctcttgaacttcggaggcctcataag
ttatttgaattattctccgaactttgcaggatgcgagaagtaggagatcgtgtagagaga
atactttctgctctcagcggcgaagaggtttgtctgcttcttgaatatatccgggagtgg
aatgcgaagccaaaattgtgccacgttgcccaatctgtgctatcacaagtcttcagaatt
ctttctccaacggagatagttgagattaaaggcatcggggagctccttgaaggtctcatt
ccatattctcagaggcatttcagcaggatagacaggcttgttagaagcacgtatttactg
gattacacattgacaggaatgtctgttattgaacctgaagcagacagatcagcagtcaat
gatgggtctccagataaatcaggcctcgagaaactagaggatggtcttttgggagaaaat
gttggtgaggagaaaatccaaaacaaggaggagctggaaagtagtgcatacaagaaaaga
aaattaccgagatctaaagatcgttctaagaagaaatcaaagaatgtcgtgtacgcagat
gcagcagcaatctctttcagagcttga
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