Eucalyptus grandis (rose gum): 104427165
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Entry
104427165 CDS
T03547
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
egr03036
]
104427165
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104427165
microRNA pathway
RISC loading complex
104427165
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
dsrm
Cas3-like_C_2
SWI2_SNF2
SNF2-rel_dom
ATPgrasp_YheCD
Motif
Other DBs
NCBI-GeneID:
104427165
NCBI-ProteinID:
XP_010038609
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All DBs
Position
2:complement(25212095..25224033)
Genome browser
AA seq
1403 aa
AA seq
DB search
MSVVGGSESPVPMDVQADAQLAADPLPFARCYQVEALEKAMKENTLVYLETGSGKTLIAI
MLLRSYAYLLRKPSRFIAVFLVPQVVLVSQQAEAIKMHTDLKVSMYWGEMGVDFWNAAMW
RQQLDRYEVLVMTPAILLNCLSHSFFKLDLIKVLIMDECHHARGKHPYACIMTDFYHPGL
RRNMQVPRIFGMTASPIKSKGGNSEIRYWQKINELETLMNSKVYTCASESVLARFIPFPT
AKFKIYEDVEIPSYPHWLDLLKGFVGKYEVDLKKSDNEESSIQSTVKKIRKIFSTFVFCL
DDLGLWLAVKAAESISRREVVDISWGNLDLSGEAIVKDFSQDVLNALSPCIPSDPNWSVG
DNVQRDVDAGLITSKVVCLIESLLEYRGIHDIRCIIFVERVVTSIVLQALLSVVLPKYCN
WQTKYIAGNNSGLLSQTRKHQNEIVEEFRSGKVNVLVATSILEEGLDVQSCNLVIRFDPS
TTVSSFIQSRGRARMQNSDYLLMVKRGDSSTHSRLEKYLSSAEIMRKESLRHASLPCEPL
NGALCDEEYYQVASTGAIVTLASSVQLIYFYCSRLPSDSYFKPAPRCVIDKETNICTLDL
PKSCPLETVRVQGNPKMLKQMACFEACKQLHMIGALTDNLIPAIVVEEAIAPVVGNEPHN
EDHPAYFPPELVNHHPNKSKTLYHCYVIELRQDYNYDATVENMVLATRSELEADICDKSF
KLQVPRGLLSVNVTYVGEIHLDENQVHLCRKFQITLLSVLLDHSMVKLRETLSGLNLVKA
SDVDYLLLPHAGAHPTPGAIDWRSVVSVYFSIDDHTCGDYLKCRRHRVRMKTGLVSRCLL
EGSLVHTPHNDRIYCVTGFFDDMNANSCLRMRDGTVTTYKKYYKESYGIKLRVEEEFLLK
GRHIFHVPNCLQQCRQQKEREPSTASVELPPELCDVILSPVSVNTLYSFSFAPLIMHQLE
ALLVAANLKRVLSDSCPEIAIIPTMKVLEALTTKRCQERYHLESLETLGDSFLKYAVCQQ
LFQTYQCHDEGLLSVKKDKLISNETLCKLGCDRKLPGFIRNEPFDPKTWIIPGDISRGGL
SLCEDLLPKARKMYTMQRRKIKRKTVADVVEALLGACVSDGGENAGLFFVHWLGIEVDFG
IRPSNRNLLANPERFINIRDIESLLGYSFRDPSLLVEALTHGSYMLPEVPTCYQRLEFLG
DSVLDYLVTIHLYRKHPGLSPGVLTDLRSASVNNNFYAQSAMKVGLHKHILHASHVLHKH
IADVANNFEKLSSEFTFGWESETSFPKVLGDIIESLAGAILVDSNYDKERVFQSIRPLLE
PLVTPETVRLHPVRELSELCQKERFILGKPIVSREDGVSSVTIQVEAEGVVYCHTTREAD
KKTAKRLASMEVLKSLKENIGRL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcgtgggcggctccgagagtccggttcccatggacgtgcaggccgatgcgcag
ctcgccgccgatcctcttccctttgccagatgttatcaggtggaggcgttggagaaggcc
atgaaggagaacacgttagtgtacttggagacagggtcaggcaagactctgatcgccatc
atgctcctccgctcctacgcctacctcctccgcaagccgtcccgtttcatcgctgttttc
ttggtccctcaggtcgtcctcgtctcccagcaagcggaggccataaagatgcacactgac
ttgaaggtgtcaatgtactggggagagatgggagttgatttctggaatgccgccatgtgg
cgccaacaactcgatcgctatgaggtgcttgtcatgacaccggctatcttgctcaactgt
ttgagccatagctttttcaagcttgacctgataaaagttctcatcatggatgaatgtcat
cacgcgaggggtaaacatccatatgcctgcattatgacggatttctatcaccctgggtta
cgtcgcaatatgcaagtcccaaggatatttggtatgactgcttcccccattaagtccaaa
ggtgggaactctgaaattcgatattggcaaaagattaatgaactcgagacactcatgaac
tcaaaggtctacacatgcgccagtgaatctgttcttgccagattcattccatttcccaca
gcaaagttcaagatttacgaagatgtggagataccttcctatccacattggctagatcta
ctgaagggtttcgtgggaaagtatgaagtggatctaaaaaagtcagataatgaggaatca
tcaattcaatccacagtgaaaaaaattcggaagatcttctcaacgttcgttttctgtttg
gatgatctcggtctttggcttgctgtaaaggctgcagagtcaatatcacgccgtgaagtt
gtcgatatatcttgggggaacttagatttgtctggtgaggcgattgtgaaagactttagc
caagatgtcctcaatgcactctcaccttgtataccttcagatccaaactggtcagttggt
gataatgtccaacgagatgtggatgctgggctcattacttctaaagtcgtttgtctcata
gaatccttacttgagtacaggggtattcatgatatcagatgtataatctttgtagagagg
gttgttacatctatagtacttcaggctttgctaagcgtggtgcttccgaaatactgtaac
tggcagaccaaatacatagcaggaaataactctggtttactatcgcaaacaaggaagcac
caaaatgaaattgtggaggaattccgtagtggaaaggtgaatgtccttgttgcaacatca
attcttgaagagggtctagatgtgcagagctgtaatttggtcattaggtttgacccatcc
accacagttagcagttttatccaatcccgaggccgtgccagaatgcagaattcggactat
ttgttgatggtgaagagaggggattcttcaacacattctcgtcttgaaaagtacctctct
agtgcggagataatgagaaaggaatctctacgtcatgcttcccttccttgtgaacctctt
aatggcgccttgtgtgatgaagaatattatcaggtcgcaagcactggagcaattgttact
cttgcttccagtgttcagttgatatacttttattgctctcggcttccttctgatagttac
ttcaagcctgctccgaggtgtgtcatagacaaggagacgaacatctgcactcttgatctt
ccaaagagttgccccctagaaactgttcgtgtccaaggcaatcctaagatgctgaagcaa
atggcatgttttgaagcatgcaaacaacttcacatgattggtgctttgacagacaatctt
atccctgctattgttgtggaggaagctattgcaccagtagttggcaatgaaccccataat
gaagaccaccccgcttacttccctcctgagctggtcaatcatcatcccaataagtccaag
acattgtatcattgctatgtgattgagttgagacaggactacaattatgatgcaacagtt
gagaatatggttcttgccacgaggagtgaattggaagctgatatttgtgataagtctttt
aaattacaagttccgaggggattgttgtcagtgaatgtgacgtacgtgggagagattcat
cttgatgagaaccaggtgcatctctgcaggaaatttcaaataactcttctcagtgtgctt
ttagatcacagtatggttaaactgagggaaacattatctggtttaaatttggtgaaagct
tctgatgttgattatctactcctaccacatgctggagctcatccaacaccaggcgccata
gattggagatctgtcgtctctgtttatttttcaattgatgatcacacctgcggggattac
ttaaagtgtcgccgtcatcgtgtaagaatgaaaaccggccttgtatctcgttgtctgctg
gagggttccctggtccatactccccataacgatcggatttactgcgttactggatttttt
gacgatatgaatgccaattcatgtttgaggatgagagatgggacagttacaacatataaa
aaatattacaaagaaagttatggcatcaagctacgtgttgaagaagagtttcttcttaag
gggaggcacatatttcatgtgccaaattgtcttcaacagtgcaggcaacagaaggagaga
gaacccagtactgcttctgtggaattgcctcccgagctatgtgacgtgattttgtccccg
gtgtctgtaaatacattgtattccttctcatttgctccattaattatgcaccagcttgag
gctttgctcgttgctgctaatctgaagagggtgctttcggacagttgccctgaaattgcc
attattcctactatgaaggtcctggaagcacttactacaaagaggtgccaagagagatac
catttggaatctttagaaactctcggagactctttcctgaagtatgctgtttgtcaacaa
ttattccagacataccaatgtcatgatgaaggcttgttaagtgtcaagaaagacaaactg
atttctaatgagacactttgcaagttagggtgcgaccgcaaactgccgggatttatacgt
aatgaaccctttgatcctaaaacatggatcattccgggtgatatatctagaggaggactg
tccctgtgtgaggacttgctccctaaagcaagaaaaatgtacactatgcagagaagaaaa
ataaaaagaaagacagttgccgacgttgttgaggcacttcttggtgcatgtgtcagtgat
ggtggtgaaaatgctggcttgttttttgtgcattggctgggtattgaagtggactttgga
atccgcccatccaacagaaatttacttgcaaatccagagaggttcattaatatcagggat
atagaatccctgttaggctactcatttcgtgacccttctttgctggtggaggcgctgact
catggatcttatatgcttccagaggtcccaacatgttaccagcgactggaattccttgga
gactcggttttagattatttggtgacgatccatttatacagaaagcatcctggcttgtcc
ccaggagtattgactgacttgaggtctgcttcggtcaacaataatttctatgctcagtct
gcaatgaaggttggattgcataagcacattctccatgcatcacatgtgctgcacaagcac
attgctgacgtggccaacaacttcgaaaaattatcatcagagtttacctttggatgggaa
tctgaaacatccttccctaaggttttgggagatataatagagtccctggcaggggcaatc
ctcgtggattcaaactacgacaaggaaagagtgttccaaagtattaggcctcttttagag
ccattggttacgccggagacagtgaggctgcatcccgtgagagagctgagtgagctttgc
cagaaggagcgtttcatattgggaaaacccatcgtgtctcgtgaggatggcgtgtcttcc
gtcacaattcaggtcgaagctgaaggggtggtgtactgtcacacgacgagggaagctgat
aagaagacggctaagaggttagcttcgatggaggtcctcaagtccttgaaagagaacatc
ggcagactgtga
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