KEGG   Eucalyptus grandis (rose gum): 104428012
Entry
104428012         CDS       T03547                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104428012
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:egr03041]
    104428012
Spliceosome [BR:egr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104428012
 Complex C
   U5 SnRNP specific factors
    104428012
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 EIF3I WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_NWD2_C Beta-prop_Nup120_160 Nbas_N Gmad1
Other DBs
NCBI-GeneID: 104428012
NCBI-ProteinID: XP_039157098
LinkDB
Position
1:complement(3026041..3029833)
AA seq 344 aa
MQVAPGENALSVAGPRPMEWSTVPYSAPPQGPMPNGRQRTSSLESPIMLLAGHPSAIYTM
KFNPAGTVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAILDLQWTTDGSQIISASPDKT
LRAWDVETGKQVKKMVEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD
KYQITAVSFSDASDKIYTGGIDNDVKVWDIRKGEVTMTLQGHQDTITGMQLSPDGSYLLT
NAMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVYIW
DTTSRRILYKLPGHTGSVNETVFHPTEPIVGSCSSDKQIYLGEI
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgcaagttgctccaggtgaaaatgctttatcagtggctggtcccagaccaatggaatgg
tctactgttccatacagtgctcctcctcaaggacccatgccaaatgggagacagagaacg
tcaagcttagaatcacctatcatgttattagcaggtcacccgagcgctatctacactatg
aagttcaatcctgctgggacagtcattgcatctgggtctcatgacagagaaatcttctta
tggaacgtgcatggggattgcaaaaactttatggtcttgaaagggcacaagaatgcaatt
ctggatcttcaatggacaacagatggctctcagattatatcggccagtcctgacaaaacc
ctaagagcctgggatgttgaaacgggcaaacaggtaaaaaagatggtagaacattcttca
tttgtcaattcatgctgtccttcacggagagggcctcctctggtggtgagtggatctgat
gacggaactgctaagctttgggacatgcgtcaaagaggtgccatccaaacatttcctgat
aaataccaaatcacggcggtttccttttctgatgcatcagataaaatttatactgggggt
atagacaatgatgtgaaggtatgggacatacgtaaaggtgaagttaccatgacccttcaa
ggccaccaagatacaattacaggtatgcagttgagtcctgatggctcctatctccttact
aatgccatggactgtaagctctgcatttgggatatgcgcccctatgcgccgcaaaaccgc
tgcgtgaagataatggaaggtcatcagcacaactttgagaagaacctactgaagtgcggc
tggtcgcccgatggaagcaaggtcaccgctggcagtgcggatcgcatggtctacatctgg
gacacgacatcccgacggatcctgtacaagctcccgggccacacggggtctgtgaatgag
accgtgttccacccaaccgagcccatcgtcggatcttgcagtagcgacaagcagatatac
ctcggcgagatctga

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