Eucalyptus grandis (rose gum): 104432577
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Entry
104432577 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 50
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104432577
03009 Ribosome biogenesis [BR:
egr03009
]
104432577
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104432577
Spliceosome [BR:
egr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104432577
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
90S particles
Helicases
104432577
Pre-60S particles
104432577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
104432577
NCBI-ProteinID:
XP_039163591
LinkDB
All DBs
Position
2:complement(37733350..37740636)
Genome browser
AA seq
717 aa
AA seq
DB search
MMLAKAPSPPISLNSTPFTSTSTATSSSVACPFSFRPRLLPSRALGARRRRLRLRLPGGG
TRNFAVRSGGYTRTPLDTPGAYQLIDDETGERFIVWGGSDDPVDSPAPPDDVLRWKPARK
SGGGGGGSSGGNHHGSTLPKDDSPAASVRGRSFGRLKSQRVKALAEKSSKLKEASHKDYE
QEIENVPFDVPDLSYSKLDKQGKKKEAAILGLKGKDSGAYRSKAAKDAAGRTDNADVDHS
VHRMEPNKHGISATRVVGTEHSVRSSNADFRGWGRGLSVDDFRSESKDLNLHRKVSSNSD
FYSRKSFEELGCSDYMIESLRKQQFLHPSHIQGMAFKPVIEGKTCIIADQSGSGKTLAYL
APVVQRLRQEELQGLSKSFSRSPRVVILVPTAELASQVLSNCRSISKFGAPFRSMVATGG
FRQKTQLENIEEGVDVLIATPGRFIFLVKEGFLKLKDLRCMILDEXDILCKDEEFEAAFQ
SIINSSPVATQYLFVTATLPVDIYNKIVEILPDCEVIMGPGIHRTSPHLEEFLVDCSGEE
GSEKTPDTAFLNKKSALIQLAEESPVTKTIVFCNKIETCRKVENALKRIDRKGARTRVLP
FHAAVSQELRQANMKEFAASPSKDVSLFLVCTDRASRGIDFTGVDHVILFDFPREPSEYV
RRVGRTARGAGGTGKAFVFAVGKQVSLARRIMERNQKGHPLHDVPSAYELMSEMFMH
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgatgctagcgaaagctccttctcctcccatcagcctcaattcaacaccattcacatcc
acctccaccgccacctccagctccgtcgcgtgccctttctccttccgtccccgtctcctc
ccctctcgggccctcggcgctcgccgccgccgcctccgcctccgccttcccggcggcggg
acccgtaatttcgccgtccggtcggggggctacacgaggacgcccttggacactccgggg
gcctaccagctgatcgacgacgagacgggcgagcggttcatcgtctggggcggcagcgac
gacccggtcgactctccggctccgcccgacgacgtcctccggtggaagcccgcgaggaag
agcggcggcggcggcggcggttctagtggaggcaatcatcatggctcaacgctgccaaaa
gatgattctcccgcagcaagtgtgaggggcagaagttttggacgattgaaatcgcagaga
gtcaaagctcttgctgaaaaatcttccaagctaaaggaagcgagtcacaaggattatgaa
caagaaatagaaaatgtaccttttgatgtgcctgatctctcttattccaaattggacaaa
caggggaaaaagaaggaagcagctatccttggacttaaaggaaaggattcaggtgcctac
cgatccaaagctgccaaagacgctgcagggaggactgacaatgcagatgtggatcattca
gtgcaccgaatggaacccaataaacacggcatatctgccaccagagtagttggaacagag
cattcagttcgtagttctaatgcagatttcagaggatggggcaggggcttgtccgtggat
gactttagatctgagtcaaaagatctaaatttgcataggaaagtttcctccaatagtgac
ttctatagtcgaaagtcctttgaagaattgggttgtagtgactatatgattgaatctttg
aggaagcagcagtttctgcacccctcacatattcagggaatggcattcaaacctgtaatt
gagggaaagacttgtattatagctgatcagagtggctcgggaaaaacgctggcttatctt
gcaccagtagtccaacgtctcagacaagaagaactgcaaggacttagcaaatccttctca
cgaagccctcgagttgtcattttggtgccaactgctgagttagcttctcaggttttgagt
aactgccgatccatatcaaagtttggggctccattccggtctatggttgccacgggtggt
ttcaggcagaaaacacagctggaaaatatagaagaaggtgttgatgtcctaatagccact
cctggtcgctttatttttcttgttaaagaaggctttttgaagttgaaggatcttagatgc
atgattttggacgagntggatattctctgcaaagatgaggagtttgaagcagcttttcaa
agcataatcaattcttcacctgtcgccacacagtatctgtttgtgacagccacattgccg
gtagatatatataacaaaatagttgaaattctccccgactgtgaagtgatcatgggacct
ggcattcatcggacaagccctcaccttgaagagtttcttgtagattgtagtggagaggaa
ggcagtgagaagactccagatactgcattcctgaataagaagtctgctcttattcagctt
gcggaagaaagcccggtaaccaaaacaattgtattctgtaacaagattgagacatgtcga
aaagttgaaaatgcattgaagcgcattgacagaaaaggtgctcgtacaagagttctacct
tttcatgctgctgtttcacaagagttgcggcaggcaaatatgaaagagtttgctgcttct
ccatctaaagatgtctccttgtttttggtttgcaccgacagggcgtcacgaggaatcgac
tttactggagtggatcatgttattctctttgacttcccgcgcgagccaagcgaatatgtc
cgccgtgttggaagaacagcgagaggggctggagggacaggcaaagcgtttgtctttgca
gttgggaagcaagtttccctggcaagaaggataatggagagaaaccagaaaggccatccc
ttgcatgatgtgccctctgcttatgagttgatgagtgagatgttcatgcactga
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