Eucalyptus grandis (rose gum): 104432609
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Entry
104432609 CDS
T03547
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104432609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104432609
03009 Ribosome biogenesis [BR:
egr03009
]
104432609
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104432609
Spliceosome [BR:
egr03041
]
Complex A
U1 snRNP components
U1 related factors
104432609
Complex B
104432609
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
Pre-60S particles
Helicases
104432609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
RSRP
Motif
Other DBs
NCBI-GeneID:
104432609
NCBI-ProteinID:
XP_039163008
LinkDB
All DBs
Position
2:37845348..37853487
Genome browser
AA seq
1194 aa
AA seq
DB search
MGLGAYNIAGYGNGGVSIDFLGPRYAPDDPTLPKPWKGLIDGSTGNLYYWNPETNVTQYE
KPAALPPPLPEGPPPSASSTPQLASNPAAQAMQQNGLVAHQGRHMAQAALGLQQQVLPGN
QLPQQHVAFQQGSQTGQSGQPLVLPANYSALQQGGYAPHQMGMQLMQMQQQQQQQQQMLP
QTAQQMQQHHPQQLQQHQLGQQMPQQSGQQMSQIAIEPVSQQAGQKMMQHPGSQMAHPQV
HQLSHQHVQFMGYKQSPPQEQQSSQQQTPSGALGQSLQMQQEYRAAYPKREEVDFQQVNQ
VGFSPPQFQPAVASSAQNLPPGSNPGQIPQMGIHSGQVPPYGRFPVNMHQGSSITQFQPA
GAGSYSQKQSPEFQNQMAAPMMHAQQPNVPPAGLRMGYEDNLHSRSGREYHHNADKEGPM
KSPQQPKLAAIPVARNPQAMTMGNSPFQNFAPGHGAGLHAPHGNVMPNMYNHAMGGPPFT
NDVPGTPYGGPSDVSNLTPAEAYRQQHEVNATGDNVPAPFMTFEATEFPPEILREMHSAG
FAFPTPIQAQTWPIALQSKDIVAIAKTGSGKTLGYLIPAFMLLRRRRNNPQKGPTVLVLA
PTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEM
KQIDLSQISLLVLDEADRMLDMGFEPQIRKIVNELPPRRQTLMYTATWPKEVRKIAGDLL
VNPVQVNIGSVDELAANKSITQHVEVVPQMEKQRRLEQILRSQERGSKVIVFCSTKRLCD
QLARSIGRNFGAVAIHGDKSQGERDWALNQFRSGRSPILVATDVAARGLDIKDIRVVINY
DFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLIKVLEGADQQVPPEVREVAS
RGGSGFGKDRGRGSRFDSGGGGGRWDSGGRVGMSGGDFGGHGGMGGGNFGGRGGTRDGNF
GGRGGIRDGGFGGRGGGRDSFGNRGGRGEFFPRRGRGPRGFGGPPGGGQGGWDRNDRGPN
DRFDMDGRGGYARGRGRGRFGSRRELPDMGRGRSYSRSPDMVRTWGSRSRSRSRSRSRSR
GRSRSWSRSRSRSRSRSWSRGRSRSYSRSPSRSRSRSRSRSYERNRRPRVSKFDQREPDA
SGLGVPPGSEAALAPPVGPSDTFSGVEPAGDLPLVADTMIVPPATEAEHSVAEP
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgggattgggcgcttataacatagcgggttatggcaacggtggagtcagcatcgacttc
cttggtccacgatatgccccagatgatccaactcttcctaaaccatggaagggattgatt
gatgggagcactggtaacttgtattattggaatcctgagaccaatgttactcagtacgag
aagccagctgctttgcctcctccattgccagaaggcccacctccctctgcctcttctaca
cctcagctggcttcaaatccagctgcccaagcaatgcaacaaaacggcttggtggctcat
cagggacgacatatggcacaagctgcgttagggctacaacagcaggtcttgcctggaaac
cagttacctcaacagcatgttgctttccagcaaggatctcaaactggccaatctggacaa
ccactggttcttcctgctaattactctgccctgcaacagggaggttatgcaccacatcaa
atggggatgcagttgatgcagatgcagcagcagcagcagcagcagcagcaaatgctgcca
caaacggctcaacaaatgcaacagcaccaccctcagcaattgcagcagcaccagctgggc
cagcaaatgccacagcagtctggacaacaaatgtcacagattgctatagagccggtgtca
cagcaagctggtcagaaaatgatgcagcatccaggctctcagatggctcatcctcaagta
catcagctttcccaccagcacgtgcaatttatggggtataagcaaagtcctcctcaggag
caacaaagttcacaacaacagaccccgagtggtgcactaggacagtcgcttcagatgcaa
caagaatacagagcagcatatccaaagagggaagaagttgattttcaacaggttaatcaa
gttgggttttctcctccacaatttcaacctgctgttgcttcatctgctcaaaacctgcct
cctggatccaacccagggcagatacctcagatgggtatccattctggtcaagttccacca
tatggtcgttttccagtgaacatgcatcaaggaagctccattactcagttccagccagct
ggggctggctcatatagtcagaaacagagtcctgagtttcagaaccagatggctgccccc
atgatgcatgcgcagcagcctaatgtgcctccagcggggttgagaatgggttatgaagat
aatttacacagtagatccggaagggaatatcaccataatgccgacaaggaaggaccaatg
aagagtccgcagcagcccaagcttgcagcaatacccgtggcaagaaatccgcaggcaatg
acaatgggtaattcgcccttccaaaattttgctcctggacatggtgctggattgcatgct
ccacatgggaacgtgatgcctaacatgtacaatcatgctatgggaggtcctccatttaca
aatgatgttcctggaactccttatggtggaccttcagatgtttccaatctcacacctgct
gaagcgtatcgtcaacagcatgaagttaatgcaacgggtgataatgtgccagcaccattt
atgacatttgaagctactgaatttcctccagagattctgagagagatgcattctgccggt
tttgcttttcccacgcctatacaggcacaaacatggccaattgcactgcaaagcaaagac
atagtggcaattgctaaaactggttcgggaaaaacattagggtacttgattcctgccttc
atgcttcttagaaggaggcgtaacaatcctcagaagggcccaacagtgctggttttggcc
cctacacgagagcttgctactcagatacaagatgaggctatcaagtttggccgttcgtca
agggttagttgcacgtgcttgtatggtggagctccaaagggaccgcagctgaaggaatta
gatcgaggagctgacattgtggtggcaactcctggacggctaaatgatatccttgaaatg
aagcagatagacctaagccaaatatctctccttgtgcttgatgaggcagatcgcatgctt
gacatgggatttgaacctcagatccgtaagattgtaaatgagcttccacctcgcagacaa
actctgatgtacacagcaacatggcccaaagaagtgagaaagatagcgggtgatcttctt
gttaaccctgttcaggttaacattggcagtgttgatgagcttgctgctaacaagtcaatt
acacagcatgttgaagtggtaccccaaatggaaaaacagcggcgtctggagcagatcctt
cgttcccaagaacggggttctaaggtaattgttttttgttctacgaagaggttgtgtgat
cagcttgcgcgcagcattgggcgtaattttggagccgttgctattcatggagacaagtct
caaggcgagagagactgggctctaaatcagtttcggagtggaaggagccctatattagtg
gccactgatgttgctgcccggggccttgacataaaagatatcagggtagtgatcaattac
gatttccctactgggattgaggattatgtccaccgaattgggagaactgggagggctggt
gcaactggagtgtcatatactttcttctctgagcaggactggaaatatgcagcggatttg
ataaaagtcctagagggggcagaccagcaagtcccccccgaggtgagagaggtggcttct
cggggtgggtctggttttggcaaagatcgtggaaggggcagccgatttgattctggtggt
ggtggtggacgttgggattcagggggtcgtgttgggatgagtggtggtgattttggtggc
catggtggtatgggtggtggcaactttggtggtcgtggtggtacgagggatggaaacttt
ggtggtcggggtggaataagagatggtgggtttgggggacgtggaggaggccgggatagc
tttggaaaccgtggtggaagaggcgaattctttcccaggcgtggtcgaggaccccgagga
tttggtggaccaccaggcggcggtcagggtggttgggataggaatgaccggggcccaaat
gatcggtttgatatggatggacgtggcggatatgcacgcgggcgtggacgggggcggttt
ggtagtagaagagagcttccagatatgggtagaggtagaagttacagtcgtagcccggat
atggttcgaacgtggggcagccggagccgcagcagaagtcgtagcagaagccgaagccgt
ggtcgcagtaggagctggagcaggagcaggagtcgcagccgaagccggagttggtcaagg
gggcggagccgtagctatagccggagccctagccggagcaggagccggagtcgcagccgc
agctacgaaagaaacaggaggcctcgtgtttccaagtttgatcagagagaaccggatgct
tcaggcttaggtgtccctcctggttcagaagctgcacttgcaccgccggttgggccatca
gatacattttcaggcgttgagccggctggggatctgcctttggtagctgatacaatgatt
gtgcctcctgcgactgaggcagagcattcagtggcggagccatga
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