Eucalyptus grandis (rose gum): 104434740
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Entry
104434740 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104434740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
egr04131
]
104434740
Membrane trafficking [BR:
egr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104434740
Hops complex
104434740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
zf_RING_Vps8_fungal
zf-C3HC4_2
TPR_11
zf-RING_5
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
104434740
NCBI-ProteinID:
XP_010045916
UniProt:
A0A059DE59
LinkDB
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Position
1:complement(34580509..34585921)
Genome browser
AA seq
945 aa
AA seq
DB search
MYQWRKFEFFEEKLGGKCAIPEEVEGEITCSSSGRGKLVIGCDDGGVSLLDRGLKFNYGF
RAHSSSVLFLQQLKQRNFLVTVGEDEQLSPQQSALCLKVYDLDRRQEEGSSTASPDCIGI
LRIFTNHFPEAKITSFLVFEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNAL
DRSQSSITGLEFRVDGPVLQLFAVTPASVTLFNLHSQPPARQTXDHIGCNVNSITMSDRL
ELIIGRPEAVYFYEIDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRSGRNTFNIYDLKNR
LIAHSLVLKEVSQMLCEWGNIVLILNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQS
QQADAAATAEVLRKYGDHLYSKQDYDEAMAQYINTIGHLEPSYVIQKFLDAQRIYNLTNY
LEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKSDGEHKFDVETAIRVCRAANYHEH
AMYVAKKAGRHEWYLKILLEDLGRYDEALQYISSLEPSQAGVTVKEYGKILIEHKPVETI
EILMRLCTEDGESMRRGASNGVYLPMLPSPVDFLNIFIHHPQALMEFLEKYTDKVKDSPA
QVEIHNTLLELYLSNDMNFPSISQADKDGEFDTRARPAAAGISKVVTNGKLVSNDKDISK
ECLERREKGLRLLKVAWPVDMEHPLYDVDLAIILCEMNGFTQGLLYIYEKMKLYKEVIAC
YMQAHDHEGLIACCKRLGDSGRGGDPTLWADLLKYFGELGEDCSKEVKEVLTYIERDDIL
PPIIVLQMLSKNPCLTLSVIKDYIARKLEQESKLIEEDRRAVEKYQEDTQTMRKEIEDLR
TNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSVLEMKRSL
EQNAKDQDLFFQQVKTSKDGFSVIAEYFGKGIVSKTSNKQTGALR
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggaggaagttcgagttcttcgaggagaagctgggagggaaatgcgcgatc
ccggaggaggtggaaggcgagatcacgtgcagctccagcggccgcgggaagctcgtgatc
ggctgcgacgacggcggggtgagcttgctcgatcgcggcctcaagttcaattacggcttc
cgggctcactcctcctccgttctcttcctacagcagctcaagcaacgcaattttctggtg
actgtcggtgaagacgagcaattatctccgcagcaatcagctctgtgcctcaaggtatat
gaccttgataggaggcaggaagagggctccagtacagccagtcctgattgtattggaatt
cttcgaatattcacaaaccactttcctgaagcgaagattacatcatttttggtctttgag
gaagctcctccgatactgctcatagccattggcttggataacggttgcatatactgcatt
aaaggggatatcgcgagggagcggatcacacgtttcaaacttcaggtggacaatgcttta
gatagaagccagtcttctataactggtctggagttcagagttgatggtccagtccttcaa
ctattcgcagtgactccggcatcagtgaccttgttcaacttgcacagtcagcctccagcc
aggcaaacanctgatcacattggctgtaatgtcaacagcattacaatgagtgaccgtttg
gagctgataattggtcgacctgaggctgtttacttttacgaaattgatggacgtggccct
tgttgggctttcgaaggagagaagaagttcctaggctggtttcgtggctatcttttgtgt
gttatagctgatcaaaggagtggcagaaatactttcaacatttatgacctcaagaatcgt
ttgatagcccacagcctagtgcttaaagaggtctctcagatgctttgtgaatggggtaat
atagttctcatactaaatgataaatctgcactttgtattggagagaaggatatggaaagc
aaattagatatgcttttcaagaaaaacctatatactgtagccattaaccttgtgcagagt
caacaagctgatgctgctgcaactgcagaagttttaaggaaatatggggatcatctatat
tctaagcaggattatgatgaggctatggcacagtatattaacacaatcggtcaccttgaa
ccttcatatgtgatacagaagtttctggatgctcaaagaatctacaacctaacaaattac
ttggaaaagttgcatgagaaggggcttgcatctaaagatcacacgacgcttctgttgaac
tgttacaccaaattaaaagatgtcgaaaagttgaatgtgttcattaaaagtgatggggag
cacaaatttgatgtggaaactgctataagggtctgtcgagctgccaattaccatgagcat
gccatgtatgttgctaagaaggcagggaggcatgaatggtatctaaagattttgcttgaa
gacctcgggaggtatgatgaggcattgcaatacatctcgagtcttgagcccagtcaagct
ggtgtaacggtcaaagaatatggtaaaattctcatagagcacaaaccagtggaaaccata
gagatactcatgaggctttgcacggaagatggagaatctatgagaagaggagcctctaat
ggtgtatatctacctatgctaccttctcctgtagattttctcaacatatttatccaccat
ccccaggccctcatggaattccttgagaagtacacagacaaggttaaagattcgccggca
caagtagaaatacacaatacccttctagagttatacctgtccaatgacatgaatttccca
tcaatatcacaagctgacaaggatggggagtttgatactagagcaagaccagcagcagct
ggaatttcaaaagtcgtgactaatgggaaactggtgtcaaatgacaaagatattagcaag
gaatgtttagaaagacgtgaaaaggggcttcgcttgcttaaggttgcatggccagttgac
atggaacatccactttatgatgttgaccttgccataattctatgtgaaatgaatggattc
acacaagggcttctctacatctatgagaagatgaaactttataaggaggtaattgcttgc
tatatgcaggcccatgaccatgagggtttgatagcatgctgtaaaaggctaggggattcg
ggtaggggaggggatccgactctttgggcagacctcctgaaatattttggtgagcttggt
gaagattgctccaaagaagtaaaggaagtcctgacttacatagagagggatgacatatta
cctcctataattgttcttcagatgctttctaaaaatccttgcctcactctctccgttatc
aaggactatattgcaagaaagcttgagcaggaatctaaactcattgaagaagatcgacga
gctgttgagaaatatcaggaagatacacagactatgagaaaagaaattgaggatcttaga
acaaatgctagaatttttcagcttagcaagtgcacagcgtgcacatttacgctggatctc
cccgctgtccactttatgtgtatgcattcattccatcagcgttgtcttggtgataatgaa
aaggaatgccccgagtgtgcacccgagtaccggtctgtactggaaatgaagagaagtttg
gagcaaaatgccaaggaccaagatctatttttccagcaggtgaagacatcaaaggatggg
ttttccgtgattgccgaatactttggaaaggggatagtgagcaaaactagcaacaaacag
acaggtgctcttaggtag
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