Eucalyptus grandis (rose gum): 104435823
Help
Entry
104435823 CDS
T03547
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104435823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
egr04121
]
104435823
Enzymes [BR:
egr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104435823
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
HECT type E3
104435823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
VPS9
Motif
Other DBs
NCBI-GeneID:
104435823
NCBI-ProteinID:
XP_010046832
UniProt:
A0A059DEL4
LinkDB
All DBs
Position
1:27019782..27028576
Genome browser
AA seq
1561 aa
AA seq
DB search
MGSRGQKRTEVVEDFPADKRACSSLDFRPSSSSLPMENQVESTSSRLESHETDMDTASTA
SASSHSEGEPEKDSTCGSCDSDDVDPRYGGLREYHRSRSFGDHSKFKKILSSLTEETEPS
GQLAVLTELCEVLSFCTEDSLSSMLADAFSPILVKLARHESNPDIMLLASRAITYLCDVF
PRSSALLVRHDAVPAICQRLMAIEYLDVAEQCLQALEKISRDQPLACLEAGAIVAVLNFI
EFFSTSVQRVALSVVANICKKLPSDCPSLFMDAVPSLCNLLQFEDQQLVESVAFCLTKIT
ERVSQNPEKLDELCKHGMINQALRLINLNSGTTLSLPVYNGIIGMLVKLSSGSYLGFRTL
YELNVCIILKDILATYDVPHGVSSPRLADGHGIQVQEVLKLLYELLPSLANNEDFQQVSE
KGAFLCSNPGFLRMFGVDILPLLIQMVNSGANIRVCYGCIIIINNLLSLSTSDILAEVLT
NSNFSSFLAGVFTRKDHHVLDIALQIAESSLRKLGDMCLKSFIKEGVFFAIDALITPEKC
SHRLFPVFSGNQLSVDSSQKPANKGVLRCLCYAFENDHSPSASETRTCKLALDTIHQRAK
DIKTSFFSPELCDSEEALTDILQMLKTLATSINDLMNKPVDESSLQHEEKFHSILHQIAV
KLNGSEPISTFEFIESGVVKSLVNYLSNGLSTSDEVELDDKVGHLLVIEKRLRVFGRLVF
TALDSLHGDLPMVILIRKLQSALSSLENFPVIINNSTKQRNSFAMVPNGRCVSHPCLRVH
FVKGEGEESLCDYSQDVLTVDPFTPLNAIERFLYPKVKKSEHVEKNALVEQQNLPLKLPI
NANLTCGESSKHMEFHGMSTALQDLQQGEANLSKSIHDQPDVGQQSNPGETSDEQDCAVS
QSKAPEPDINGSTQSPSSEDDNPSPKLLFYLDGQQIDRTLSLYQVFLQQQIKVGNETIAS
AKLWSQVFTLTYKRAAEPRQEYSQECPFSARNLPLLDKKGVHMQGIPCFSYLFAGKLVSN
LEKPSPVYDIIVLLKSMEAMNRRAFQLMSMERMAAFAEGRMDNLDDLKFMAPLVLQNEFV
SSKLTEKIEQQMRDSLAVSTGGMPSWCNQLMDSCPFLFSFEARRKYFHLSAFGQLQIQSD
PSSHGSTGSSTDRRRSASSLVRKKFLVHRDRIMDSAIQMMDLYARQRVALEVEFDDEVGT
GLGPTLEFYTLISHEFQKPGLGMWREDHGSFSSNKVMETHGSEMILSPFGLFPCPWAPAL
CTSENVEFAEVINRFILLGKLVAKALQDGRVLDLHLSKAFYKLIIGQDLTLYDIPSFDPE
LGRTLLEFQALVDRKRFLESVHGESSTLRNDLCFRNIAMEDLCLDFTVPGYTNYVLSSGP
DHKMVNMTNLEDYVSFVVDATTNSGISRQVEAFKSGFNQVFPIKNLQIFSEDELERLLCG
ENNSWEFSELLEHVKFDHGYTASSTPVIYLLETIQEFDREQQRSFLQFVTGAPRLPSGGL
ASLNPKLTIVRKHCSKSADAELPSVMTCANYLKLPPYSSKEKMKEKILYAIREGQGSFHL
S
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atggggagccgtggccagaagcgaactgaagtagttgaggattttcctgctgataagcgt
gcttgtagttccttggattttagacccagttcttcgagcttgccgatggagaaccaagta
gagtctaccagctcgaggttggaatcccatgagacagacatggacactgcctcgactgct
tcagcgtccagtcattccgagggtgagccggaaaaagattcgacgtgcgggtcttgtgat
tccgatgatgtggacccccggtatgggggtctccgtgaataccatcggagtcggtcattc
ggtgaccattccaaattcaagaagattctatcgagcttgactgaagaaactgaaccttcg
gggcaattggctgtgcttactgagctatgtgaagttctgtcattctgtacagaggattcg
ctttcaagcatgctggctgatgcattctctccaattcttgtaaagcttgcgaggcatgag
agcaatccagacataatgctattggcttcaagggctataacttatctttgcgacgtattt
cctcgatcatcggcactcctagttaggcatgatgcagttcctgctatttgccaacgattg
atggcaattgagtacttggatgttgctgaacagtgtttgcaagccttggagaaaatatct
cgagaccaacctcttgcctgcttagaggctggtgctattgtggctgtgcttaattttatt
gagttcttttcaacaagtgtgcagcgagttgctctctctgttgtcgcgaatatctgtaag
aaacttccatctgattgcccttcacttttcatggatgctgttcctagtctctgcaacctt
cttcaatttgaggatcaacagcttgttgaaagtgtggcattctgcttaactaagataact
gagagagttagtcagaacccggagaagttagatgaattgtgcaagcatggaatgatcaac
caagccctacgtcttatcaacttaaatagcggaaccactttatccctgccagtttataat
ggaatcattgggatgcttgtgaaactttcttctggttcatatcttggtttcagaactctc
tatgaacttaatgtatgcatcattctgaaggatatattggctacttacgatgttccccat
ggagtgtcatctcctcgtttggctgatggacacggtattcaggtacaagaagttctgaag
ttgctatatgagcttctcccctcgctggccaataacgaggattttcagcaagtatctgaa
aagggagcttttttatgcagtaaccctggttttctgcggatgtttggagtggacatactt
ccattactgattcagatggttaattctggcgcaaacatacgtgtttgctatggttgcata
ataatcatcaacaacttgttatctctgagcacatctgatattcttgctgaagtgctgaca
aactcaaatttttcaagctttttggcgggagtgtttacgcgcaaggatcaccacgtattg
gatatagcccttcaaattgctgagtcaagcttgcgaaagctcggtgatatgtgcttgaag
tctttcatcaaggaaggtgtctttttcgctattgatgccctaataacaccagaaaaatgc
tcgcatagattgtttccagtctttagtggcaatcagctctcagttgattccagtcaaaag
ccagctaacaagggagtgctgagatgcttatgttatgcctttgaaaatgatcattctcct
tcagcttcggaaacgagaacttgcaagcttgctctggataccattcatcaacgggcaaag
gacataaaaactagcttcttctctcctgagctttgtgattctgaggaagctctgactgat
atccttcaaatgctcaaaactttggctacttcaataaatgatctgatgaacaagcccgtt
gatgaatcctctttacagcatgaggagaagtttcattccattttgcatcaaatagcagtg
aagctcaacggtagtgaacccatttccacttttgaatttattgagagtggcgttgttaaa
tctttagtgaattacctatccaatggcttgtcaacaagtgatgaggttgaactggatgac
aaagttggtcacttgcttgtcattgagaaacgactgagagtttttggaaggttagtattt
actgccttggattcccttcatggggatttgcccatggtgattttgatacggaaactgcaa
agtgcactgtcctcgctggaaaactttcccgtcattataaacaattcaaccaagcaaaga
aactcgtttgctatggtccccaatggacgttgcgtatcacatccatgtctaagagttcac
tttgtgaagggagaaggggaggaaagcctatgtgattattctcaggatgttctaacagtg
gatcctttcacacctttgaatgccattgaaaggtttttatatcccaaggtcaagaaaagt
gagcatgtggagaaaaatgcacttgttgaacagcaaaacttacctctgaagttgccaata
aatgcaaatcttacttgtggcgaaagttccaagcatatggaatttcatggtatgtccaca
gctttacaagacctgcaacaaggtgaagccaacttatcaaagtctatacatgatcaaccg
gatgtaggacaacagtcaaatcctggtgaaacttcagatgaacaggattgtgcggtctca
caatccaaggctccagagccagatattaatgggtcaactcaaagtccatcctctgaagat
gacaatccttcgccaaaattgttgttttacttggatgggcaacagattgatagaacactt
tctctttatcaagtttttcttcaacaacaaataaaagtgggaaatgagacgattgccagt
gcaaagttgtggagtcaggtgtttacactaacatataaaagggctgctgaaccaagacaa
gagtattctcaagaatgcccattctcagctagaaatttgcctctattggataaaaaaggg
gtccatatgcaaggcataccatgtttctcttacttatttgctggtaaactcgtttcgaac
ttggagaagcccagtcctgtctacgacatcatagtcttgttaaaaagtatggaagcaatg
aacagacgagcatttcaactgatgtctatggaaagaatggctgcttttgctgaaggaaga
atggacaacttagatgatctcaagttcatggctcccttggtcctgcagaatgagtttgtg
agcagcaagttgacagagaaaatagaacaacaaatgcgggattccttagctgtttcaact
ggtggtatgccttcatggtgtaaccaactgatggattcatgcccctttctattcagtttt
gaggcacgaaggaagtactttcacttgtctgcttttggtcagctccagattcaatccgat
ccctcatctcatggtagtacaggctcttcaactgatagaaggcgaagtgcaagtagcttg
gtgcgaaagaagtttctagtacatagagatcgtattatggactctgccatccagatgatg
gatttgtatgcccgtcagagggtagcccttgaagttgaatttgatgatgaagtcggtact
ggtcttggtcccacattagagttttacaccttaatcagtcatgagtttcaaaagcctggc
cttggtatgtggagagaggatcatggttcattttcatccaacaaggttatggaaacgcat
ggttcagaaatgattctctctcctttcggactttttccctgcccctgggctcctgcttta
tgtacatctgaaaatgtagagtttgcggaagttattaacaggttcattctacttgggaag
cttgtggcaaaagctcttcaagatgggagggtcttggatctgcatttgtctaaagcgttt
tataaactaattattggacaggaccttactttgtatgacatcccctcatttgatcctgag
cttggtaggactctgctagaattccaggctctagttgacaggaaaaggtttctggaatct
gttcatggtgaaagctcaaccctcagaaatgacttgtgctttaggaatatcgctatggag
gatctttgcctggatttcactgttcctggttatacaaattatgttctttcatctggacct
gaccataagatggtaaatatgactaatctggaggattacgtatcattcgttgtggatgct
accacaaattctggaatttcaagacaagtagaggccttcaaatctggatttaatcaggtt
ttccccattaagaatcttcagattttcagtgaggacgaactagagcgcttattatgtgga
gaaaataattcttgggagttcagtgagctcttggagcacgtcaagttcgatcatgggtac
accgcaagcagtactccggtcatctatcttttggaaaccattcaagaatttgaccgggag
cagcagcggtcatttctgcaatttgtgacaggagcacctcgtcttccttcagggggttta
gcatcactcaacccgaaactgacaattgttcggaagcattgtagcaaatctgcagatgct
gagctgcccagcgtgatgacctgcgccaactatttgaagctaccgccttactcttctaaa
gagaagatgaaggagaagatcttatatgccataagagaaggccaggggtcattccatctt
tcatag
DBGET
integrated database retrieval system
