Eucalyptus grandis (rose gum): 104435888
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Entry
104435888 CDS
T03547
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104435888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104435888
03041 Spliceosome [BR:
egr03041
]
104435888
03009 Ribosome biogenesis [BR:
egr03009
]
104435888
03016 Transfer RNA biogenesis [BR:
egr03016
]
104435888
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104435888
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104435888
Spliceosome [BR:
egr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104435888
Complex C
U4/U6.U5 tri-SnRNP related factors
104435888
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
Pre-60S particles
Helicases
104435888
Transfer RNA biogenesis [BR:
egr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104435888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104435888
NCBI-ProteinID:
XP_010046886
UniProt:
A0A059CJH4
LinkDB
All DBs
Position
1:complement(38163813..38175668)
Genome browser
AA seq
993 aa
AA seq
DB search
MEALGKRKEPDSSEVTDSYTGSPNQGNEESAPKRHNSVRTCVHEVAVPTGYDANKDESVH
GTLSNPVYSGEMAKTYPFKLDPFQQVSMACLERKESVLVSAHTSAGKTAVAEYAIAMSFR
DKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTIAPNASCLVMTTEILRGMLYRGS
EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHVH
KQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDEHEEFREDNFLKLQDTFTKQKVGEGSK
FSNGKASGRIAKSGTASGGSSIYKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN
TQEEKEVVEQVFRNAVLCLREEDRNLPAIELMLPLLQRGVAVHHSGLLPVLKELVELLFQ
EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDAR
GICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFH
QFQYEKALPNIGRKVQKLEEEAASLDASGEVEVAEYHKLKLEIAQLEKKMMTEITRPERV
LYFLLPGRLVRIREGGTDWGWGVVVNVIKKPSTGLGTLPSRGGGYIVDTLLHCSPGLSEN
NSRPKPCPPHPGEKGEMHVVPVQLSLVSALSKLRIAIPADLRPLEARQSILLAVQELGSR
FPQGLPKLNPVKDMGIEDPEIVELVNQIEELERKLLSHPLHKSQDAHQMRSFQRKAEVNH
EIQELKSKMRESQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTE
LMFNGTFNDLDHHQIAALASCFIPGDKSNEQIHLRTELARPLQQLQDSARRIAEVQKECK
LDVNVEEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA
AANAVGETNLENKFAAASESLRRGIMFANSLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggaagctttggggaaaaggaaagaaccagactcttctgaagtcactgactcctatact
ggatctccaaatcaaggcaatgaggaatctgctccgaagcggcataattcggttcggaca
tgtgtgcatgaggtcgctgtaccaactggttatgatgcaaacaaagatgaatcggtgcat
gggactctctcaaatcctgtttacagtggtgagatggcaaaaacttacccattcaaactt
gacccctttcagcaagtttccatggcatgtttggagcgaaaggagtcagttttagtgtcg
gcacacacttcagcgggtaaaactgcagttgctgaatatgccattgcaatgtcttttagg
gataaacagagggtaatatatacatcacctttgaaagctttgagcaaccagaagtatagg
gagctaagtcaagagtttaaagatgtcgggttgatgactggtgatgttaccattgcacct
aatgctagctgcttggtcatgaccacagaaattcttagaggaatgctgtataggggttct
gaggtattaaaggaagttgcatgggttatctttgatgagatacattacatgaaggaccga
gaaagaggtgttgtttgggaagagagtattatattcttgccaccggccattaaaatggtt
ttcctttctgcaacgatgtcaaatgctactgagttcgcagaatggatttgccacgtgcat
aaacagccatgccatgtagtatacacagacttcagaccaactccgctgcagcattatgtt
ttccctatgggtgggagtggtttgtatcttgtagttgatgagcatgaggaattcagagag
gacaactttctcaagcttcaagatacttttacaaagcagaaagttggcgaggggagcaag
ttttctaatggaaaagcaagtggcagaattgccaaaagcggcactgcctcagggggttct
agtatatacaaaattgtgaagatgataatggagcgtaagtttcaacctgtcatagttttc
agctttagtaggcgagagtgtgaacaacatgctatgtcaatgtccaagcttgattttaac
acacaagaggaaaaggaagttgtggagcaagtttttcgcaatgcagtcctgtgcttgcgt
gaggaagatagaaacttacctgccattgagttgatgctgccgttacttcaacgtggagtt
gctgttcatcattctggccttctccctgttcttaaggaattggtagagcttctttttcag
gaaggcttagtgaaggctctttttgccacagaaacttttgccatgggtttgaacatgcct
gcaaagacagtggtctttacagcagttaagaagtgggatggtgatagtcatcggtacatt
ggatccggtgagtacattcagatgagtggaagagctggccgtcgtggaaaagatgcgcgc
ggtatctgtatcataatgattgatgagcagatggagatgaatacactcaaggacatggtt
ttggggaaaccagctcctttagttagcacattcagactgagctattactcaattttgaat
ctaatgagccgtgctgaaggacaatttactgctgaacatgtcataaggaactcatttcat
caatttcagtatgagaaggccttgcccaacatcggaagaaaagttcaaaaactggaagaa
gaagctgcaagtctcgatgcttctggggaggttgaagtagcagagtatcataagctgaag
ttggaaattgctcaactggagaagaagatgatgacagagataaccaggcctgagagagtt
ctctattttcttttgccagggcggctggtgaggattagggaaggcggaacagattggggg
tggggagttgtagttaatgttatcaaaaagccctcaactggtttgggtacattaccatca
cgaggtggtggatatattgtggatactctgcttcattgctctccaggtttaagtgagaat
aattcacggcccaaaccttgtccaccacaccctggagaaaagggtgaaatgcatgtggtc
cctgtgcagttgtccttagtttctgctcttagcaaactcagaatagcaattcctgctgat
ctccgaccactggaagcaaggcaaagcatactgctagctgtccaagagcttggaagtcgt
tttcctcagggtctgccgaagcttaatcctgtaaaggacatgggtattgaggatccagaa
atagtcgagttggtcaatcagattgaggaacttgaacgaaaattattgtctcatccattg
cacaagtctcaagatgcacatcagatgagaagttttcaaagaaaagcagaagtaaatcat
gaaattcaagaactcaaatcgaaaatgcgtgaatctcagcttcaaaaatttcgtgatgaa
ctcaagaaccgttctcgggtcttaaaaaagcttggccacattgatgctgatggtgtcgtc
cagttaaagggacgggcagcctgcttgattgacacgggggatgaactacttgtcactgaa
ctgatgtttaacggtacattcaatgatcttgatcatcaccaaattgccgctcttgctagt
tgtttcatccctggagataaatcgaatgaacagattcatttgaggactgaacttgccagg
ccattgcaacaactccaagacagtgcaaggagaatagcagaggtgcaaaaagaatgcaag
ttggatgtaaatgtggaggaatacgtggaatccacagtcagaccatacttaatggatgtg
atctactgctggtccaagggagcaagctttgcagaagtcatacagatgactgatatattt
gagggtagcattattagaagtgccagaaggcttgatgagtttttgaaccagcttcgagct
gctgctaatgcggtgggggaaaccaatcttgaaaacaaatttgctgcagccagtgaaagt
ctccgtcggggtataatgtttgccaattccctttatctctaa
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