Eucalyptus grandis (rose gum): 104436827
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Entry
104436827 CDS
T03547
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104436827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104436827
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104436827
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
ARM_TT21
TPR_1
TPR_MalT
SRP_TPR_like
PknG_TPR
TPR_8
TPR_10
Motif
Other DBs
NCBI-GeneID:
104436827
NCBI-ProteinID:
XP_018726064
UniProt:
A0A059CPB3
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Position
3:20162385..20171638
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AA seq
865 aa
AA seq
DB search
MESRDLSSTAPPRRLRRLRLPRVLLLRALVRGAAAPPPPPAEDEGVLTVTAALAKEALFR
FQSRKYGECVEFLRQLFQKKHDDPKVLHNIAVAEYFRDGCSDPRRLLEVLNTVKRKSEEL
ARASLEQREVVGNKANLGPKGSSTMAQQMNSLNNASILYTDEFNSSVATFNIAVIWFHLH
EYGKALSILEPLYSNIQPIDETVALHICLLLLDVALACHDAAKSADVLNYLEKAFGVNQG
ENGSSVQQQPANLVGKSSSVPNSSLISDASNQESVSINASEKPLSRTLSDETLENMLSTL
DIGGQDAVRAMGIPSSVDLSRSPIDKTITAVNFKLKLQLYRVRFLLLTGNLKAAKREVKG
AMNVARGRDSSMALLLKSQLEYARGNYRKAIKLLMALGVRTEAGISSMFLNNLGCVYHQL
AKYHSATVFFSKALSSSSSIRKEKPLKLSSISQDKSLFIAYNCGIHYLAYGKPILAARCL
QKALLVFYNRPLFWFRLAECCLMALEKGLFKTGDASDETIKLCVVGKGKWRQIVVKDAPE
NGLTDLIENECSLGSDGQLNLSLKLARLCLLNALHILNESEPSQVNSSLPPDGSLDGSKS
TEEMISGNSNHRTLPGVDAKPSNVGLGQLNANGDVKDQKTGTSEEIMSGSLSMYEDNRRR
QSRLMKQAILANQAFVELELENPMGALSCALAILQLPDCSRIYTFLAHMYAAEALCLLNR
TKDAAEHLLFYLSEGNQIELPYCEEDFEQWRTERIFDPEETNGGTATANNFSSEEAQALM
FLKPEEARATLYANLAAKSALQGELEMAQQLVAQALAVLPASREATLTATYIHLMLGNSQ
EALSKLKQFNHVRFLPFTCTLDKSS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgcgagatttgtcgtccacggcgccgccccggcggctgcgacggctgcggctg
ccgcgggtgctgctgctgcgggcgttggtgcggggtgctgcggctcctcctcctccgccg
gcggaggacgagggcgtcctgacggtaaccgccgcgctggccaaggaggcgctcttccgg
ttccagtcccgcaagtacggcgagtgcgtcgagttcttgcgtcagctctttcagaagaag
cacgacgatccgaaggtcctccacaatattgcggttgccgaatactttcgtgatggctgt
tcagatcctaggagattgcttgaagtactgaataccgtcaagagaaaaagtgaagagctt
gcccgtgcatctttggagcagcgtgaggttgtcggcaacaaagccaatttaggtcctaag
gggagttctaccatggcacaacaaatgaattcattaaataatgccagtattctttacaca
gatgagtttaactcttctgtggcaacatttaatattgctgtcatatggttccacctccat
gaatatggcaaggcattatccatcctggaaccattgtatagcaacattcaaccaatagat
gagactgtagctcttcacatatgccttctgttgctggacgtggctttagcctgccatgat
gcagcaaaatctgcggatgtacttaattatttagagaaagcttttggtgttaatcaaggc
gagaatggcagtagcgtgcagcaacaacctgctaacttagtggggaagtcttcttctgta
cctaacagttcattgatttcagatgcttctaatcaagagtctgttagtataaatgcttcg
gaaaaacctttgtccagaacactatcagacgagacactggaaaatatgctatcaactctg
gacattggtggacaggatgcagtaagagcaatgggtattccatcttcggtcgatctctcc
cggagtccgattgataagaccatcacggctgttaattttaagcttaagttgcaactatat
agggttcggtttttgcttctaacgggaaatttgaaggcagcaaagcgtgaagtcaagggt
gctatgaatgttgcacgaggaagagattcgtccatggctctgctcctaaaatcccagctt
gagtatgctcgtggcaattaccgtaaagctattaagcttttgatggctcttggggttcgg
acagaagctggaatctctagcatgtttcttaacaatctaggatgtgtttatcaccaactg
gctaaatatcactcggcaaccgtatttttctcgaaggcactgtctagcagttcatcaatt
cggaaggagaagcctttgaagctgtctagtatctcccaagataaatctcttttcattgca
tataactgtggcatacattacttggcatatgggaaaccaatacttgctgctcggtgtctc
cagaaggctcttttggtcttttacaaccggcctcttttttggtttcgacttgctgagtgc
tgtctcatggctttggaaaagggactattcaagactggcgatgcttctgatgagactatt
aagctttgtgttgttggcaaaggaaaatggaggcaaatagttgtgaaagatgcacctgaa
aatgggctaacagatctgatcgagaatgagtgctctcttggcagtgatggacagcttaat
ctctctctgaaacttgctcgcttgtgtcttttgaatgcattgcacatattaaatgaaagt
gaaccaagtcaagtcaattcaagtttgcctcctgatggctccttggatggatctaagtca
acagaagaaatgatttccggaaactcgaaccacagaacattgcctggtgtagatgccaaa
ccatcaaatgtgggcttagggcagcttaatgcgaatggagatgtaaaagaccagaagaca
ggaacaagtgaggaaattatgagtggctctctctcgatgtatgaagataatcgcagaaga
caatcgagattaatgaagcaagccattcttgctaaccaggcgtttgtggagttagagttg
gaaaatcctatgggggccctgtcatgcgctttggctatcttgcagcttccagattgttcc
agaatatacacttttcttgcccatatgtatgcagcagaggctctttgcttgctcaacagg
accaaggatgctgcagaacatttgttgttttacctctcggaaggaaatcagattgaattg
ccatactgcgaagaggacttcgagcaatggcggacagaacgaatctttgaccctgaagag
acaaatggaggtacagcaactgctaataatttttcttcagaggaggctcaagctctgatg
tttcttaagccagaagaagcacgtgccaccctttatgcgaatcttgcggccaagtcagcc
ttgcaaggtgagctcgagatggctcaacaattagttgcacaagcgttagctgtgctaccg
gctagtcgagaagccactctaactgccacatatatacatctcatgttggggaattcacag
gaagctctctccaagttgaaacagtttaatcatgtcaggttcttacccttcacctgtact
ttggataaatcttcttag
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