Eucalyptus grandis (rose gum): 104437229
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Entry
104437229 CDS
T03547
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104437229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
egr04121
]
104437229
03036 Chromosome and associated proteins [BR:
egr03036
]
104437229
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
104437229
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
104437229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_CAF1B_HIR1
WD40
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
MIOS_WD40
Beta-prop_WDR19_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
104437229
NCBI-ProteinID:
XP_010048437
UniProt:
A0A059DF91
LinkDB
All DBs
Position
1:complement(33340499..33344054)
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AA seq
341 aa
AA seq
DB search
MENSTQESHHLRSENSVTHESPYPLYAMAVSSSPARHHHHHRIAVGSFLEEYTNRVDVVS
FDPDSLSIKTHQGLSFDHPYPPTKLMFHPPSSNPSKSDLLASSGDYLRLWEVRESSIEPV
AVFNNSKTSEFCAPLTSFDWNEIEPKRVGTCSIDTTCTIWDIEKNAVETQLIAHDKEVYD
IAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILM
DSSKVVILDIRSPAVPVAELERHRASVNAIAWAPQSHRHICSAGDDSQALIWELPTVAGP
NGIDPMSMYSAGSEINQLQWCAAQPDWIAISFGTKMQLLKV
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactcgacccaagaatcccaccacctgagatccgagaactcggtgacccacgag
tccccctacccgctctacgccatggccgtctcctcctccccggcccgccaccaccaccac
caccgcatcgccgtcgggagcttcctcgaggagtacaccaaccgggtcgacgtcgtctcc
ttcgacccggactcgctctccatcaagacccaccagggcctctccttcgaccacccgtac
ccgcccaccaagctcatgttccacccgccctccagcaacccctcgaagtcggacctcctc
gcctcctccggcgactacctccgcctctgggaggtccgggagagctcgatcgagcccgtc
gccgtcttcaacaacagcaagacgagcgagttctgcgccccgctcacgtcgttcgactgg
aacgagatcgagcccaagagggtcggcacgtgcagcatcgacaccacgtgcaccatctgg
gacatcgagaagaacgccgtcgagacgcagctgatcgcccacgacaaggaggtgtacgac
attgcctggggcgaggctagggttttcgcttccgtctccgccgatgggtcggtgcggatc
ttcgatttgagagacaaggagcattcgacgatcatctacgagagccctcatcccgatacg
ccgttgctcaggctggcttggaacaagcaggacttgcgatacatggccaccatcttgatg
gacagcagtaaagttgtgatcttggacataaggtcgccggcggtgccggtcgcggagctc
gagcggcatcgggcgagcgttaatgcgatcgcgtgggctccgcagagtcataggcacatc
tgctcggccggggatgactctcaggcgctcatttgggagttgcccaccgtggctgggccc
aatgggattgacccgatgtcgatgtactctgctgggtccgagataaaccagttgcagtgg
tgtgcggcgcagccggattggattgctatctcgtttgggaccaaaatgcagcttttgaaa
gtttga
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integrated database retrieval system
