KEGG   Eucalyptus grandis (rose gum): 104438065
Entry
104438065         CDS       T03547                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104438065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104438065
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     104438065
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_DCAF12 eIF2A Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Ge1_WD40 Cytochrom_D1 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_WDR11_1st Beta-prop_IFT140_1st Tricorn_2nd CFAP43_N DUF5711 Beta-prop_pof12 Beta-prop_ACSF4 PD40
Other DBs
NCBI-GeneID: 104438065
NCBI-ProteinID: XP_010049442
UniProt: A0A059CUZ4
LinkDB
Position
3:complement(61285257..61302213)
AA seq 321 aa
MKIAGLKSVENAHDESVWAAAWVPATESRPALLLTGSLDETVKLWRPDELALERTNAGHF
LGVVSVAAHPSGVIAASASIDSFVRVFDVDTNATIATLEAPPSEVWQMQFDPKGTTLAVA
GGGSASIKLWDTATWELIATLSIPRPEQPKPSEKGNKKFVLSVAWSPDGRRLACGSMDGT
ISIFDVARAKFLHHLEGHFMPVRSLVFSPVEPRLLFSASDDAHVHMYDSEGKSLVGSMSG
HASWVLSVDVSPDGAALATGSSDRTVRLWDLSMRAAVQTMSNHSDQVWGVAFRPMAGAGV
RAGGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagatcgcgggcctcaagtccgtcgagaacgcccacgacgagtcggtgtgggccgcc
gcgtgggtgccggcgacggagtcccggccggcgctgctcctcaccggctccctcgacgag
accgtgaagctctggcggcccgacgagctcgccctcgagcggaccaacgccggccacttc
ctcggcgtcgtctccgtcgccgcccacccctccggcgtcatcgccgcctcggcctccatc
gacagcttcgtccgggtcttcgacgtggacaccaacgccacgatcgccacgctcgaggca
cccccgtcggaagtctggcagatgcagttcgatcccaagggcaccactctagcggtggca
ggtggagggagcgcatcaatcaagctttgggacactgccacatgggaactgattgcaacc
ctctcgattcctcgtccagaacagcccaaaccctccgaaaaaggcaacaagaagtttgtc
ctctctgtcgcgtggagtcctgatggcagaaggcttgcctgcggttcaatggatggtaca
atctctatattcgacgtggctcgggccaagtttctgcaccacctggaaggccacttcatg
ccagtgcgatctctcgtattttccccagttgagccacggctgcttttttctgcatccgac
gatgctcatgtgcacatgtatgattccgaaggtaagtccttggtggggtccatgtctggc
catgctagctgggtattgagtgttgatgtcagcccggatggagcagcacttgcgacaggt
tcaagtgacaggactgtgaggctgtgggatctcagtatgagggctgccgttcagacgatg
agtaaccattcggatcaagtttggggggttgcctttcgaccaatggcgggtgctggtgtc
agagctggtggtcggcttgctagtgtatctgatgacaagagcatatcactctatgattac
tcatga

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