Eucalyptus grandis (rose gum): 104438150
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Entry
104438150 CDS
T03547
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03030
DNA replication
egr03420
Nucleotide excision repair
egr03430
Mismatch repair
egr03440
Homologous recombination
egr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104438150
03420 Nucleotide excision repair
104438150
03430 Mismatch repair
104438150
03440 Homologous recombination
104438150
03460 Fanconi anemia pathway
104438150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
egr03000
]
104438150
03032 DNA replication proteins [BR:
egr03032
]
104438150
03400 DNA repair and recombination proteins [BR:
egr03400
]
104438150
Transcription factors [BR:
egr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104438150
DNA replication proteins [BR:
egr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104438150
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104438150
MMR (mismatch excision repair)
104438150
DSBR (double strand breaks repair)
HR (homologous recombination)
104438150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
RMI1_C
DAG1
Motif
Other DBs
NCBI-GeneID:
104438150
NCBI-ProteinID:
XP_010049537
UniProt:
A0A059CW39
LinkDB
All DBs
Position
8:54576529..54579805
Genome browser
AA seq
641 aa
AA seq
DB search
MPVSLTPNAIPAINGGDVDSKPLVQVVDVRPVGGSGGQERHRLLLSDGVSSQHAMLATQL
NDLVKSGRVRKGSVVQLIDYICSVVQNRKIIVVLNMETIIPDCEIIGNPKMYPETNAAAQ
KVLPNINTGNVQRFSNDNINGRNPVQNGQNFQSAVQPPPRANAVQNMQSFRPTVQPPYRP
PPNYRNRGPVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD
LLDSDGGEIRVTCFNAVVDRFYDIIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEATS
TVDVCPEEDASIPQQQFSFRPISDIENAENNSIIDVIGVVVSINPSVPILRKNGMETQRR
NLNLKDGSGRTVELTLWGEFCNREGQKVQEMIDSGIFPVLAVKAGKVSDFSGKSIGTISS
TQLFINLDIPEACSLRSWFDFGGKDAASLSISREIMSGGSKNEIRKTVSQIKEEGLGRSD
KPDWITVKATVSFIKTDTFCYTACPLMIGDRQCNKKVTRAGNTRWLCDRCNQEFEECDYR
YLLQVQIQDHTGLTWVTAFQESGEEILGFSAKELFMLKQQDDERFAETVRSKLFYQFLFR
LKIKEETYGDEQRVKITVVKADKVNYSSESQYMLDLISKVS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgagcctgacgccgaacgccatcccggccatcaacggcggcgacgtcgactcg
aagccgctggtccaggtcgtcgacgtcaggccggtcggcgggagcggcggccaggagcgg
caccgcctcctgctctccgacggcgtctcctcccagcacgcgatgctcgccacgcagctc
aacgacctcgtcaagtccggccgcgtccgcaagggctccgtcgtccagctgatcgactac
atctgcagcgtcgtccagaaccgcaagatcattgttgtgctaaacatggagaccattata
ccagactgtgaaatcattggaaacccaaaaatgtatcctgagaccaacgcagcagctcag
aaagtgctgcctaatatcaacactgggaatgttcagaggttcagtaatgacaatatcaat
ggcagaaatcctgtacaaaatggacagaatttccaatcagctgttcaacctcctccccga
gcaaatgctgtgcagaatatgcaaagttttcgaccaactgttcaacctccatatcggcct
ccaccaaactacagaaatcgtggcccagttatgaagaatgaggcacctgcacgcatcata
cctattgctgctctcaacccttatcaaggcaggtgggccataaaggcaagagtcactgca
aaaggagatcttcgccgatataataatgcacgtggtgatgggaaggttttctcctttgat
ctccttgattctgatgggggagaaattcgggtgacatgcttcaatgctgttgttgatcgt
ttctacgatataattgaggtaggaaaagtctacttgatctcaaaaggtagcttgaaacct
gcacaaaagaactttaatcatctgaagaacgaatgggagatttttttggaggccacttcg
actgtggatgtttgtcccgaggaagatgcttcgattccacaacagcagttctccttcaga
cctattagtgacattgagaatgctgagaataattctattattgatgttattggagttgtt
gtatctatcaacccctctgttccaatcttaagaaaaaatggtatggaaactcagagaaga
aatctgaatctgaaggatggatctggaaggaccgtggaattgactctctggggtgagttc
tgcaacagggagggtcagaaagtgcaagagatgattgattctggaatctttccagttttg
gctgtcaaagctgggaaagtcagtgacttcagtggaaaatctatcggtaccatttcttcc
acgcagctttttattaatctggatattccagaggcttgtagtctgagaagctggttcgat
tttggggggaaggatgcggcttctctgtccatttccagggaaatcatgtccggaggatcc
aagaatgagatacgtaagaccgtgtctcaaatcaaagaagaaggccttggaagatcagat
aagccagattggatcacagtgaaggcgacagtatctttcatcaagactgatactttctgc
tacacagcttgcccattgatgattggagatagacaatgtaataagaaagtgacgagggca
ggaaacacaagatggctgtgcgataggtgcaaccaagagttcgaggagtgtgattacagg
tatctcctccaagtccaaatacaagatcataccggattgacttgggtgactgctttccag
gaatccggtgaagagatcttgggtttctcggccaaggagttgttcatgctcaaacagcag
gacgatgaaagatttgctgagaccgtccgaagtaaacttttctatcagtttctattcagg
ctcaaaataaaggaggaaacatatggagatgaacagagagtgaagatcaccgtagttaag
gccgataaggttaactactcttcggagagccaatacatgctagatttgatttcgaaagtc
tcgtga
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