Eucalyptus grandis (rose gum): 104438375
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Entry
104438375 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104438375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104438375
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104438375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
104438375
NCBI-ProteinID:
XP_010049810
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Position
3:complement(71512432..71518485)
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AA seq
737 aa
AA seq
DB search
MPRKFSHGLDYDDEDYDDDYDYDDDVDYDAEDNGNSPKPDQETTRSAVWRCSICTYDNDQ
SMTACDICGVLRNPLPSSVISNGNDLKTVCKDSGASKMARSLFESLPNQTPKRAALIQQQ
NDDPLTGQRTILHEFADVHGNFDKLHEAFNTRAHKSVNIVPFKFDVPSPDDVVTNGLHSS
KRGPKASATVRKDNTSAPMTTRSSNSSSFMMSKGRNVTGNENNRVKDEERNLRSSAKSPD
EMAGTSSSYHGGVEYTLPTDGIKPQSLVRSLDSVSINDRGGTGKGASQGQYKPEKWMLPE
AEDGLLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKHEKEAKLEGKGSFAYAWA
LDESPEERERGITMTVAVAYFDTKKYRVVVLDSPGHKDFVPNMISGATQADAALLVIDAS
IGSFEVGMDGSKGQTKEHAQLIRSFGVDQLIVAVNKMDVVEYSKDRFDLIKQQLGTFLRS
SGFRDSSVCWIPLSAMENQNLVTAPSDVRLLSWYKGPYLLDAIDSLQPLTRDVLKPLVMP
ICDVIKSPSMGQVSACGKLEAGALRSGVKVLVMPSGDVGTVKSLERDSRPCAIARAGDNV
AVVLQGIDTSKVISGGVLCHPDFPISIATHLELKVLVLDGASPILIGSQLEFHIHHAKEA
ARVEKMVSLLDPKTGKVMKKAPRCLLAKQKAVIEVVLQGPVCAEEFSSCKALGRVSLRAL
GRTIALGIVTQVIEKEP
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaatttagtcacggccttgattatgatgatgaagactacgatgatgactac
gactacgacgacgatgttgattatgatgcagaagataatggcaattcacctaagccagat
caagagaccaccaggtctgctgtttggcgttgctccatttgtacctatgataatgaccag
agcatgaccgcatgtgatatttgtggggttcttcgaaatcctttgccttcaagtgtcatc
agcaatggcaatgacctgaaaacagtgtgtaaagattctggagcatccaaaatggccagg
tctctttttgaatcattgcccaatcagacacctaaaagggctgcattaatccaacagcaa
aatgatgatcccttgacaggacagcgcaccatcttacatgagtttgctgatgtgcatggg
aacttcgataagctacatgaggcatttaacactcgtgcccataaaagtgtcaatatagtg
ccttttaagtttgacgtcccatccccagatgatgtagtcactaatggattgcactcctcc
aaaaggggtccgaaagcaagtgcaaccgtaaggaaggataacacttctgcgccgatgacc
acaagatcatcaaatagctcatcttttatgatgtcaaagggcagaaatgtcactggtaac
gagaacaatcgagtaaaagatgaagagcgtaatctaagatcaagtgctaaaagtccagat
gaaatggcaggcacctcgtcaagctatcatggtggggttgagtacactttaccaacggat
gggatcaagccgcaaagtcttgtgcgtagtttagacagtgtctctattaatgatagaggt
ggcactggaaaaggtgcttctcaggggcagtataaacctgaaaaatggatgcttcctgaa
gcagaagatggcttattgagtcagctgaatcttgccattgtggggcatgttgattctggg
aaatcaacactttcaggtagacttctgcacctgttgggacgaatatctcaaaaggagatg
cacaagcatgaaaaagaggccaaactagagggcaaggggtcctttgcttatgcttgggca
ttggatgagagcccagaggaaagggaaaggggaataaccatgacagtggcagttgcttat
tttgataccaaaaaatatcgtgttgttgtgctggactccccagggcacaaggattttgtt
ccgaacatgatatcaggagccacacaagctgatgccgcattgctcgtcattgatgcgtcc
attggttcttttgaagttggcatggatggtagtaagggccaaactaaagagcatgcacag
cttatcagaagctttggagtagatcaacttattgttgctgttaataaaatggacgtcgtg
gagtactcaaaggatagattcgatttgatcaaacagcaacttggaacattcctccggtct
agcggttttagggactcatcggtatgttggatccctctgagtgccatggaaaatcaaaat
ctggtcactgctccttcagacgttcgtttactatcctggtataagggaccatacttgttg
gatgctattgactccctccaacctctaactagggatgttttgaaacctctagtcatgccc
atatgtgatgttattaaatcaccttcgatgggtcaggtctctgcttgtggtaaattggaa
gctggagctcttcgaagtggagtgaaggttcttgtcatgccatcaggggatgtggggaca
gtcaagtctttggaacgtgactctcgcccatgtgcaatcgcgagagctggggataatgtt
gctgtggttcttcagggaattgatacaagcaaagtgatatctggcggggtcctttgtcac
cccgatttccccatttccattgcaacgcatctggagctgaaagtgctcgtcttggatggt
gcttcccccattctgatcggttctcagttggaatttcatattcaccatgcaaaggaagct
gcgagagttgaaaaaatggtgtcattgctcgatcctaagactggcaaggtgatgaagaaa
gccccacggtgtctccttgcaaagcagaaggcagttattgaggtggttttgcaaggacca
gtttgtgcagaagagttttcgagctgtaaagctctcggaagggtctccttaagagcactg
gggagaactattgctttaggaattgtcactcaagtaattgagaaagagccatag
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