Eucalyptus grandis (rose gum): 104438418
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Entry
104438418 CDS
T03547
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104438418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104438418
03019 Messenger RNA biogenesis [BR:
egr03019
]
104438418
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104438418
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104438418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pfc11_Clp1_ID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
104438418
NCBI-ProteinID:
XP_010049870
UniProt:
A0A059DFJ4
LinkDB
All DBs
Position
1:30787747..30795046
Genome browser
AA seq
1038 aa
AA seq
DB search
MDGLRRSFDRSRELVPKKPRLAAEELGGRPYALRPGAPVVNPPLVQQQQRFKLADREVEG
NDPSSEAYQPQPLPQHQQQQQHQELVEQYRTALAELTFNSKPIITNLTIIAGENLHAAKA
IAGTVCTNIIEVPSDQKLPSLYLLDSIVKNIGRDYIKHFGVEIAEVFCKAYRQVDSSVHS
AMRHLFGTWKGVFHPRTLQYIERQLGFGSTGNGSLASTTSRSDSQSQRPAHSIHVNPKYL
ERQRLQQSSGAKVNDVAGALASSSEDLERLDGAPSVSGGHTWEDPPVKTQSIQRLQRDSL
GEAVQEKRIGVVYGNYDYGSDTSRNSALGAGRITGKISEQGLSKPWYGTGGSVAQSASSQ
RNGFSGKHGISSYQPSKTASVDSHLQPSHGITNRSGGISSSWKHSEEEEFVWDSVDPGSM
ERDVTNVPSISRKDRWTLDGAEEMGSISNLAKPLSKDGFIHTGTNLGVSEGYPGRVGGLS
SSMGSFSRREVGSEMRSPNVKQIGPGFSPSTVSSGSTESQRIQSLGPASPSGRSLAYQPL
STSDTRLTHQKLQNLSDPRVHMLPRTEFKTAHLPEKSSVGPNNLYNQDSLSKFRLKELKP
SPPSTFPLQTRHHRPQLQQARSEPAMPEILGQSKKPLQSEVSERDASSASETARQSSKGS
FLATEIEGGAVSSDAAARPPSPSAVDTRSLPSRVRAKPPSLTGPPPIDLVSPDLGASLST
LLASRRDDSSISRDASKVKAGLPPVPPGPTPTTVDNAADRSSSAVETTLNPVSSLLSTLV
ARGLIKPESTSVPSQMPMQVQDEAKDDATAGFGPDSSASVSTAVPLSSTEDEVPIVKQVT
ESSAPLPHSPREIKNLIGFEFKPSVVREFSESVISELFEDFPHRCGICGVQLKFQEHLDQ
HLAWHDAKGVLFGSRGWYLNLTDWVARKEYLPSGSENIVSEEKSGETTEMHGPMVPADEY
QCACILCGELFDEVYSLERDEWMFKGAVHMDIPTASSTMIGIKNQSSPQGLVVHASCVSE
SSLQDLGLANDIKLEKIA
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggatggcttgcgtagatcgttcgatagatcgagggaattggtcccgaagaagccgcgg
ctggcggcggaggagctgggcgggcggccctacgctctgaggccgggggcgccggtcgtg
aacccgccgctggtgcagcagcagcagaggttcaaattggccgatagagaagtggagggc
aatgatccgagcagcgaggcgtaccagccgcagcccctgccgcagcaccagcagcagcag
cagcaccaggagctggtggagcagtacaggaccgcgctcgcggagctcacgttcaattcg
aagccgataatcaccaacctgacgatcatagccggggagaatttgcatgccgccaaggcg
attgcgggcactgtgtgcacgaacattatcgaggttccaagtgaccaaaagcttccatca
ctttatctgttagacagcattgtaaagaatattgggagggactacattaagcattttgga
gttgaaatagcggaggttttctgcaaggcatataggcaagttgattcttcagtacattca
gccatgagacaccttttcgggacctggaaaggagtctttcatcctcgaactcttcaatac
atcgaaagacaacttggctttggctctacgggtaacggttcgttggcatctacaacatct
aggtctgattcacagtctcaacgcccagcacatagtattcatgttaaccccaaatatcta
gagaggcagcggcttcagcagtcaagcggagcaaaggtaaatgatgtagctggtgctttg
gcaagctcatctgaggatttagagaggctggatggagcacctagtgttagtggtggacat
acatgggaggatccgccagtgaaaacgcaaagcattcaacggttgcagagagattctctt
ggtgaagcagttcaagaaaagaggataggtgtagtttatggaaattatgactatggttct
gatacgtcaagaaattcagcactaggagctggaagaattactggaaagattagtgagcag
ggacttagcaagccttggtatggaactggaggtagtgttgcccaatcagcatccagccaa
agaaatggttttagtgggaagcatgggatttcgagttaccagccatcgaaaactgctagt
gtcgattctcatcttcagccatcacatggcatcacaaatagaagtggtgggatctctagt
agctggaagcactctgaggaagaagaattcgtgtgggattctgtggaccctggatctatg
gagcgagatgtaaccaacgtccctagtatctcaagaaaagatcgttggactctcgatggt
gcagaggaaatgggatcaatatctaaccttgcaaaaccactttcaaaggatgggtttata
cataccggaactaatttaggtgtgtcagagggttaccctggtagagttggtggactgtca
tcaagtatgggttccttttcaaggagggaagttggatcagagatgagatctcctaacgtc
aaacaaataggccccggcttttctcctagcacagtctcctcaggatccacagaaagccaa
cgtatacagtctctagggcctgcatcaccttctggacggtcattagcataccagcctctt
tctacttcagatacacgcctcacccatcaaaagttgcaaaatttgtccgacccgcgagta
catatgttgcctcgcactgagtttaagacagctcatctgccagaaaagtcaagtgtaggg
ccaaataacctttataatcaggattccttgtctaagtttcgcctcaaggaattgaagcct
tctcctccttctacatttcctcttcaaacaaggcaccatcgtcctcaattgcagcaggca
cgatcagaacctgcaatgccagagatattaggtcagagcaagaagccacttcaatccgaa
gtttctgaacgtgatgcttcttctgcctcagaaacggcaagacaatcaagtaagggtagt
tttttggctaccgagattgaaggtggagctgtctctagtgatgctgctgctaggccacca
agcccgagtgctgtggacacgaggtctctgccatcacgagtacgtgccaagcctccatca
ttgactgggcctccccccatcgatttggtctcccctgatttgggtgcttcattgtcaact
ctcttagcatctcgtcgtgatgactcatctatttcaagagatgcatctaaagtgaaggcg
ggactgcccccagtgccaccaggtccaactccaactaccgttgataatgcagctgacagg
agttctagtgcagtagaaacaaccttaaatccagtgtcgagtctcttgagcacattagtt
gcaaggggtctgataaagccagagtcaacttctgtgccttcccaaatgcctatgcaagtg
caggacgaggccaaagatgatgctactgctggatttggcccagattcttcagcttcagtt
tcaacagctgtgccgctatcctcgactgaagacgaggtacctattgtgaagcaagttact
gagagctctgctcccttgcctcattcgcctagggaaataaagaacctcataggttttgag
tttaagccatctgttgttcgagagttcagtgaatctgtgatcagtgaactattcgaggat
tttccacataggtgtggcatctgtggtgtgcaattaaaatttcaagagcacctggatcaa
catttggcttggcatgatgcaaaaggtgtactttttggttcgaggggctggtatttaaac
ttaacagactgggtagctcggaaagaatatcttccatctggatctgaaaatattgtttca
gaagaaaagagtggcgagacgactgagatgcatggcccgatggttcctgcagatgaatat
cagtgtgcttgcatcttatgtggtgagctctttgatgaggtttatagccttgaaagggat
gagtggatgttcaagggagcagtccacatggatatcccaactgcaagcagtactatgatc
ggcataaaaaaccagagttctccccagggtctcgtcgtccatgcatcttgcgtatcagaa
agttcactgcaggacctgggattggcaaatgacataaagctggagaaaattgcataa
DBGET
integrated database retrieval system
