Eucalyptus grandis (rose gum): 104438483
Help
Entry
104438483 CDS
T03547
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104438483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104438483
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104438483
mRNA cycle factors
Common to processing body (P body) and stress granule
104438483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
104438483
NCBI-ProteinID:
XP_010049945
UniProt:
A0A059CX64
LinkDB
All DBs
Position
3:66060062..66068000
Genome browser
AA seq
1042 aa
AA seq
DB search
MIIKTDNMPAPSWERAQRLYEKNIELDNRRRKSAQARIPSDPNVWQQMRENYEAIILEDH
TFSEKHNIEHALWQLHYKKIEELRAHFSAAQASANPNASVNGKGPSSRPDRITKIRLHFK
NFLSEATGFYHDLILKIRSKYGLSLGYFAEDVDSRLLSEKDGKNSADVKRVLISCHRCLI
YLGDLARYKGLYGEPDSKSREYAAASSYYLQAASLWPSIGNPHHQLAILASYSGDDLLTV
YRYFRSLAVDSPCSTARDNLIVAFEKNRQSFSLLHGDAKSSMVRSAGKVRGQQAKLASRD
AEAATFKESNSNTHDTYNSLCIHFVRLNGILFTRTSSETFVEVLSSVVTGLCDLMSSGPE
EEMSFGNDAVENGLFFIRLVSILIYTIHNVKRESEGQSYAEIVQRAVLLQNALTAVFDIM
GLVMERCEQVRDPSLSYLLPGILVFVEWLASYPDVAMGGDVDEKQATVRSNLWIHYVSLM
NKLLSIGSMSIDDCDDESCFDNMSRYEEGETGNRLALWEDFELRGFLPLVPAQTILDFSR
KHSFGSEGIKEKNARVKRTLAAGKVLVGGVKINNKTVWYDSKAKKFVVGVESQLSAEDIH
PPDSTVPKANDMLLENGAQMAVKTEEFQSNSQLYVEGEEEDEEIVFKPTAAEKQTDTAVQ
YMVSSKMLEPQKNAFGNDQPFPVFKPTAAEKQTDTAVQYMVSSKMLEPQKNAFGNDQPFP
VFKPTAAEKQTDTAVQYMVSSKMLEPQKNAFGNDQPFPVASMAAPPDNSLHLTSSDAFSW
NPISAGNLQPITSHTSNWLTEETMLSNGFKDLKMLEKGHLAHSEINENATNFFPAVNSFP
IRQSATSSDSLFLNQANAPDAMVPSPIYNSFMSSGVNVDALAVKPSSTSPVVLKKKPVAR
PLRHLGPPPGFNAVPKQANGPFSGLDLTHQNQMLDDYSWLDGYQMSSGFRGLVNNSNSYS
SFANLPPISGSAASIGTVSFPFPGKQVPSVHQMEIHKGWYDHETLDHQKQMQQPQQIING
NPQLGPLPEQYQGSVWPDHHFV
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgatcataaagacggataatatgcctgctccatcctgggagcgtgcacaacgactctat
gaaaagaacattgagttggataataggcgtcggaagtctgcccaggcacgaattccatct
gacccaaatgtatggcaacagatgcgtgagaactatgaagcaataattcttgaggatcat
acattttcagagaaacacaatatcgagcatgctctatggcaattgcattacaagaaaatt
gaggaattgagagcacacttcagtgctgctcaagcatctgcaaatccaaatgcatcagtc
aatgggaaaggaccctcctctcgtccagatcgaataacgaaaataagattgcattttaag
aattttctttctgaagcaactgggttctaccatgatttgatcttgaaaatcagatcaaag
tatggtctttctcttggttacttcgctgaggatgtagacagcagacttttgtccgagaaa
gatggaaaaaattcagcggatgtaaaaagggttttgatatcttgtcaccgttgcttgatt
tacttgggcgatcttgcacgctacaaaggtctgtatggagagcctgactcaaaatctcgt
gagtatgcagcagcttcaagttattatctccaagctgcatctctttggccatctattggg
aatccccatcatcagctggcgattttagcttcttattctggggatgatttgcttactgtg
taccgatatttccggagtttggctgtcgacagcccatgttctactgcaagggacaacttg
attgttgcctttgaaaagaatcgtcaaagtttctctctactgcatggggatgctaaaagt
tctatggtccggtctgctggaaaagtgagaggacagcaagccaagcttgcatctagagat
gctgaagctgcaactttcaaagaaagtaattccaacacccatgatacctacaactcactt
tgcatccactttgtccgtctaaatgggattctgttcactcgaacaagctcggagaccttc
gtggaagtcctctcttcggttgtcactggtttatgtgatcttatgtcttctgggccagaa
gaagagatgagttttggcaatgatgctgttgagaatggtcttttctttatcaggcttgtg
tctatccttatatatactattcataatgtgaaacgcgagagtgaaggccagagttatgca
gaaattgttcagcgtgctgtactccttcagaatgcattgactgcggtttttgacatcatg
ggactagttatggagagatgcgaacaagttcgtgatccttctttgagttacctcttacct
ggcattttggtctttgtggaatggttggcatcttatcctgatgttgccatgggtggcgat
gttgatgagaagcaggcaactgttagatcaaatttgtggattcattacgtctctcttatg
aataagcttttgtcgatcgggtcgatgtccatagatgactgtgatgatgaaagttgcttt
gataacatgagcagatatgaagaaggggaaactggaaaccgccttgctttgtgggaagat
tttgagttgagaggatttctgccgcttgttcctgcacaaaccattttggacttttcaaga
aagcattcttttggaagtgaagggatcaaggaaaagaatgctcgtgttaaaagaactctt
gcagctgggaaagtgcttgtaggaggggttaaaatcaataacaaaacagtttggtatgac
tcaaaggctaagaaatttgtcgttggcgttgagagtcaactgtcagcagaggatattcat
cctcctgattctactgtgcctaaggcaaatgacatgttgctagaaaatggagcacaaatg
gctgtgaaaacggaggagttccagtcgaattctcagctatatgtggagggggaagaggag
gatgaagagattgtttttaagccgacggcagcagagaagcaaacagatactgctgttcaa
tatatggtctcttctaagatgttggagccacagaaaaatgcctttggaaatgatcaaccc
tttccagtttttaagccaacagcagcagagaagcaaacagatactgctgttcaatatatg
gtctcttctaagatgttggagccacagaaaaatgcctttggaaatgatcaaccctttcca
gtttttaagccaacagcagcagagaagcaaacagatactgctgttcaatatatggtctct
tctaagatgttggagccacagaaaaatgcctttggaaatgatcaaccctttccagttgct
tctatggcagcgcctcctgataactctctgcatttgacctcttcagatgctttttcatgg
aaccccatttctgctggtaatctacagcctatcacatctcatacttcaaattggttgaca
gaagaaactatgctgtctaatggcttcaaagatctaaagatgctggagaaagggcatctg
gcgcattctgagatcaatgagaatgccaccaactttttccctgccgttaattcatttccg
atcagacagtctgctactagtagcgacagcttgtttttgaatcaggcaaatgctccagat
gccatggttccttcacccatatataattctttcatgtcttctggagttaatgttgatgct
ttggctgtgaagccatcatctacttctcctgtagttttaaaaaagaaaccagttgctagg
ccactcagacatcttggccctcctcctggttttaatgctgttcctaagcaggccaatgga
cccttttctggattagacttgacccatcagaaccaaatgttggatgattatagctggttg
gatgggtatcagatgtcttccggattcaggggcctagtgaacaattccaatagttattca
tcttttgcaaacttaccacccattagtggcagtgctgcttcaattgggaccgttagcttc
ccgtttccgggaaagcaagttccatcagtccaccaaatggaaattcataaaggctggtat
gatcacgagactctggatcatcagaagcagatgcagcaacctcagcaaataattaatggg
aacccacagctcggtcctttgccagagcagtaccaaggatcagtctggccagatcatcat
tttgtgtga
DBGET
integrated database retrieval system