Eucalyptus grandis (rose gum): 104439114
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Entry
104439114 CDS
T03547
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104439114
03041 Spliceosome [BR:
egr03041
]
104439114
03036 Chromosome and associated proteins [BR:
egr03036
]
104439114
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104439114
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104439114
mRNA cycle factors
Common to processing body (P body) and stress granule
104439114
Spliceosome [BR:
egr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104439114
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104439114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104439114
NCBI-ProteinID:
XP_039166125
LinkDB
All DBs
Position
3:16551704..16555819
Genome browser
AA seq
463 aa
AA seq
DB search
MACAQTGSGKTAAFCLPIVFGVLREGSKRERHPSSRRTACPSGLVLSPTRELACQIYEEA
KKFAYQTVVKVAVVYGGAPFGQQVRTLEKGVDILVATPGRLVDMIERDKVSLRKIRYFTM
DEADRMLDMGFEPQIRKIVERMDMPPSGARQTMLFSATFPDDIQRLASDFLSDYIFLAVG
RVGSSTDLIAQKVEFVDDKDKRSFLVDLLHSQGKNGCVGSKQGLTLVFVETKRGADALEN
WLLRSGFHAIAIHGDKVQMERERALRSFRSGTIPIMVATDVASRGLDIPHVAHVINYDLP
KSIDDYVHRIGRTGRAGKSGLATAFFNGKNLSLATALVQLMQEANQQVPSWLGECAEQSG
SRSHGLARNRRASRFGGNDFRRGPKSSNRSYSSSSSYRDAHTYGSGENYYADPPSTDVYG
YAAADSYLSASHGYYDAANNNSRANESDGYGTSHGSVMASGWE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcgcacagaccgggtccggcaagacggccgccttctgcttgccgatcgtcttc
ggggtcttgcgcgagggctcgaagagagaaaggcacccgtcgtcgagaagaaccgcgtgt
ccttcgggcctcgttctgtctccgacgagggagttggcttgtcagatatatgaggaggcg
aaaaagtttgcatatcaaactgttgtgaaagtcgctgttgtatatggtggtgcgccattt
ggtcagcaggttcgcaccctggaaaaaggtgtcgatattttagttgccacacctggtcgg
ttggtggatatgattgaaagagataaagtctctctaaggaagattagatattttactatg
gatgaagctgatcgtatgctagatatgggctttgagccccagattcgcaagattgtcgaa
cgaatggacatgccaccatctggagcaaggcagacaatgctattcagtgctacttttcca
gatgatatacagaggctggcgtccgattttctctctgattatatatttcttgccgttgga
agggtaggctccagcacggatctgattgctcaaaaggttgaatttgttgatgataaggat
aagagaagctttcttgtggatcttcttcattcccaaggaaaaaatggatgtgttggcagc
aagcaaggtttgactttagtgtttgttgagacaaagaggggagcagatgcccttgagaac
tggctgttgagaagtggctttcatgctattgctatacatggagataaagttcaaatggaa
agagagcgagctctgagatcattcagaagcggaaccattccaattatggtagcgacagat
gttgcctcacgaggtcttgatatcccacatgttgctcatgttataaactatgacttgccc
aaaagtatagatgactatgtgcacaggattggccggacaggccgagctggtaaatctggg
ttggctactgcattcttcaatggaaagaatttgtcactggcaacagctctcgtgcaactt
atgcaagaggccaatcagcaagtcccttcttggctcggtgagtgtgccgaacagtcaggt
agtcgtagccatggcctggctcgaaatcgtagggcaagcaggtttggcggcaatgacttc
cgaagaggtccaaaatctagcaataggagttactcttcttctagcagttacagagatgcg
catacttacggttctggtgaaaattattatgccgaccctcccagcaccgatgtttacggc
tatgctgctgctgactcgtacctttcagcaagccacggttattatgatgctgctaataac
aattcccgcgccaatgagtcggacgggtatggcacgagccatggatcagtcatggccagc
ggatgggagtag
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