Eucalyptus grandis (rose gum): 104442349
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Entry
104442349 CDS
T03547
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03030
DNA replication
egr03420
Nucleotide excision repair
egr03430
Mismatch repair
egr03440
Homologous recombination
egr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104442349
03420 Nucleotide excision repair
104442349
03430 Mismatch repair
104442349
03440 Homologous recombination
104442349
03460 Fanconi anemia pathway
104442349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
egr03000
]
104442349
03032 DNA replication proteins [BR:
egr03032
]
104442349
03400 DNA repair and recombination proteins [BR:
egr03400
]
104442349
Transcription factors [BR:
egr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104442349
DNA replication proteins [BR:
egr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104442349
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104442349
MMR (mismatch excision repair)
104442349
DSBR (double strand breaks repair)
HR (homologous recombination)
104442349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
DUF223
RADX
zf-CCHC_3
zf-CCHC_2
DUF1952
CDC24_OB3
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
104442349
NCBI-ProteinID:
XP_010054054
UniProt:
A0A059CJ91
LinkDB
All DBs
Position
2:complement(4402708..4406946)
Genome browser
AA seq
904 aa
AA seq
DB search
MSAAAAVKLTEGAIWKICERELVGESEVKPIVQVVDMKMVKTPGNQNQNPGGAGAVERER
QRFRMVLSDGTHMQQGMLATQHNHLVDSGRLQKGSIIRMNHFVCSPVKDRLIIVIVDLDV
VLDKQDLIGEPVMAKVPGSEAAKPSLPTPSLQNTHVGSYSSNIDQGRYPATSAAPSYGNA
APIAPVYSNTEPGVPRSAQFGGSYTNQNMGFHNNTNEFQRSPVNTYAHQPRPSYQQPPPM
YMNRGPIAKNEAPPRIIPIAALNPYQNRWTVKARVTAKGELRHYNNPRGDGKVFSFDLLD
SDGGEIRVTCFNAVADQFYNQIETGKVYLISRGTLKPAQKNFNHLRNDHEIYLETTSIVQ
PCIEDDNQIPRQQFHFHPISDVEGMESNSIVDVIGVVHSINPVTSIMKKNGSETQKRTLH
LKDESGRSVELTLWGSFCNAEGQRLQILCDSGQYPVLAVKSGRISEFNGKAVGTISTSQL
FIEPDIEEARRLKEWFEREGKTAPTVSISREMTSMGRTDARKTVCQIKDEKLGTSEKPDW
ITISANIAYIKLDNFCYTACPIVIGDRQCNKKVTNNGDGKWRCDRCDRCVDECDYRYILQ
IQIQDHTGQAWVTAFQECGEEIMGVSAKELFYLRTENEDERFGEIIRKVFFTKFIFKLKV
KEEIFSDEQRVKSTVVKADKVNFSSEARFLLDLLEKNRADGSGSSDVRSENIVSNSGMKS
TLTGNAESMQSSSFVGNHSMGNNAGTGGYRSPVSYTSAVQNGNQYNGARLSTTGPLDMNS
SCTSCGRSGHSSGNCPSIMSGPSQTMGGGAYMNRAPGGSGDTCYKCNQTGHWARDCPGLS
GVPPAYGSSAATPGGSGDTCYKCNQTGHWARDCPGLSGVPPAYGSSAATPGRYGMVSRER
VGGF
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcggcggcggtgaagctgacggagggcgcgatatggaagatctgcgagcgc
gagctcgtcggggagagcgaggtgaagccgatcgtgcaggtggtggacatgaagatggtg
aagacccccggcaaccagaaccagaacccgggcggcgccggcgccgtggagagggagcgg
cagaggttccggatggtgctgtccgacgggacccacatgcagcagggcatgctcgcgacg
cagcacaaccacctcgtcgactcggggcggctgcagaagggctctattatcaggatgaat
cacttcgtctgcagtcccgtcaaggatcgactgattattgttattgttgacttggacgtc
gtactcgacaagcaagatcttattggagaacctgtaatggcgaaagttcctggaagtgaa
gcggcaaaaccaagtttgcccacgccctctttacaaaacacgcatgttggttcttactcg
agtaatattgatcagggaaggtatcctgcaacaagcgctgctccttcttatggcaatgct
gctcccattgcgccggtgtactcaaacacagaacctggtgtccctaggtcagctcagttt
ggtgggtcctatactaatcagaacatgggtttccacaataataccaatgaatttcaacgt
tcacctgtgaatacctatgcccaccagcctcggccatcatatcagcaaccaccaccaatg
tacatgaatcgaggacctatagcaaagaatgaagctcctcctaggataattccaatagct
gccctcaacccttaccagaacaggtggacagttaaggccagagtgactgcaaagggtgag
cttaggcattacaacaatccacgtggtgatggaaaagtgttttcttttgatcttcttgat
tcggatggtggggagattcgtgtgacgtgctttaatgctgttgctgaccagttctacaac
cagattgaaacaggcaaggtgtacttaatttccagaggtactttgaaacctgctcagaag
aatttcaatcacctccgaaatgatcatgagatatatctggagaccacctcgatcgtacag
ccatgtattgaggatgataaccaaattccgaggcagcagtttcattttcatcccattagt
gatgttgaaggcatggaaagcaacagtatcgttgacgtgattggtgttgttcactctata
aatcccgtcacttccataatgaagaaaaatggttctgaaactcagaaaagaacccttcat
ttgaaagatgagtctggccgaagtgttgaattgactttgtgggggagcttttgtaatgca
gaaggacaaaggctgcaaattctgtgcgactctggacagtatcccgtactggcggtgaaa
tctggtagaatcagtgaatttaatgggaaggcagtgggtaccatttctactagccagtta
tttatagagcctgacatcgaagaggctcgcaggctcaaggagtggtttgagcgggaaggt
aaaactgcccctacagtatccatatcaagagaaatgacaagcatgggcaggacagatgca
agaaaaactgtatgtcagatcaaagatgaaaagctagggacttctgagaagccagattgg
attacaatttctgccaatattgcatatataaagttggataatttctgttacacagcctgt
cccattgtaattggagatcgccaatgcaacaagaaagttacaaacaatggcgatgggaaa
tggcggtgtgatagatgcgaccgctgtgttgatgaatgcgactacaggtacattctccag
atccagattcaggaccacactgggcaagcatgggtgaccgcattccaggagtgtggtgag
gaaataatgggtgtgtctgcaaaggagttgttctatctgagaactgagaatgaagatgag
aggtttggagaaatcattcgcaaggttttcttcaccaaattcatattcaagttgaaagtg
aaggaggagatctttagtgatgaacaacgcgtgaagtcgactgttgtcaaagcagacaag
gtaaatttctcatcagaggccaggtttcttctggatttattggagaagaacagagcagat
gggtctggttcttccgacgtcaggtcggagaacatagtttcaaactccgggatgaaaagt
actttaacagggaatgctgagagtatgcaatcttcatcttttgtgggaaaccattccatg
ggaaataatgctggtacgggaggttataggtcaccggtgagctatacttcggcggttcaa
aatggaaaccagtataatggtgctagactttccacgactggcccacttgatatgaattca
agctgcaccagctgtgggagaagtggccatagctccggaaattgcccaagcatcatgagc
ggcccttctcagacgatgggaggaggggcatacatgaatagagcacctggaggttctggt
gatacatgctataagtgcaatcaaactgggcactgggcgagagactgtcctgggctaagt
ggggttccacctgcctatggaagcagtgccgcaacacctggaggttctggtgatacatgc
tacaagtgcaatcaaactggtcactgggcgagagactgtcctgggctaagtggggttcca
cctgcctacggaagcagtgccgcaacacctgggaggtacggcatggtttccagggaaagg
gttggtgggttttga
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