Eucalyptus grandis (rose gum): 104442350
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Entry
104442350 CDS
T03547
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104442350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104442350
03012 Translation factors [BR:
egr03012
]
104442350
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104442350
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104442350
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104442350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
Ank_2
Ank_5
ATPase
nSTAND3
AAA_22
AAA_19
AAA_7
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104442350
NCBI-ProteinID:
XP_010054059
UniProt:
A0A059DGS4
LinkDB
All DBs
Position
1:complement(40157276..40168455)
Genome browser
AA seq
1422 aa
AA seq
DB search
MGKKRLRKGEQQQQQQQQQQRRRQPQQQQQQQQQQEKNKPNRKVAELTRIRIAERLEQFR
ASRQQVLTFDENLSNHERAVVHEVCRKMGMTSKSSGRGNQRRVSIYKSKGKGENSEEKGS
MSNLTLSQEAKEILNDLFIRYPPGEGGTSEQIAVKHTEKSERRKERQRDDIFCRPPMDKA
DITKKVESLSARLEKAANLKQITEERSKLPIASFRDVITSSVECHQVVLISGETGCGKTT
QVPQFLLDSMWAKGEACKIVCTQPRRISATSVAERISSERGENIGEDIGYKIRLESKGGK
HSSIVFCTNGVLLRVLVSKGAGESNGEASNRHLKHPLSDITHIIVDEIHERDRFSDFILA
ILRDMLPSYPHLRLILMSATLDAERFSNYFGGCPVIRVPGFTYPVRIFYLEDVLTMLKSI
QENHLDSTTFGITDENQMLTEEDKVALDDAINLAWSSDDFDPLLDLVSSEGTPQIYNYQH
SLTGMTPLMVFAGKGRAGEVCMLLSFGADCLLKAKDGATALDWAESQNQQEAAQLIRKQM
ESTSSNSVDEQLLLDRYLSTVNPELIDVVLIEQLLKKICTDSKDGAVLVFLPGWDDINRA
KSRLLMSPFFKDTSKFAILPLHSMVPSMEQKKVFKRPPVGCRKIILSTNIAETAITIDDV
VYVIDSGRMKEKSYDPYNNVSTLQSSWISKASAKQREGRAGRCQPGTCYHLYSKLRAASL
PDFQVPEIRRMPIEELCLQVKLLNPNGNLEDFLMKTLDPPVFETIRNAVNILKDIGALSL
DEKLTDLGQKLGSLPVHPLTSKMLLFAILMNCLDPALTLACASDYRDPFTLPMLPNEKKK
SAAAKAELASLYYGQSDQLAVVAAFECWKKAKDKGQEARFCSQFFVSSSTMRMLSGMRKQ
LQMELTRNRFIPEDVSTCSLNAHDPGIIHAVLVAGLYPSVGRLVPRHRSGKRFVETANGD
RARLHPHSINYKLSFLKTDDQPLFMYDEITRGDGGTLLRNCTVVGPLPVLLLGTEIAVAP
GNSDDDDDDDDDDDEDDGDDGESDYDEDSDENQTKNNDNSQGRDGERTMSSPDAPVTVVV
DRWLPFGSTALDIARIYCLREQLSAAILFKVIHPHEVLPPVLGAYVYATACILSYDGLSG
ILSPSGHVDSSMSMVKADESDELMPDRRKLGEFLRFLMRPDRHHNSTYSYWEAGSSLYTE
KQNNNDLSNQNIQQPFSPASTSVQAKPPSEDSTTVGHGPRGQKPGLAASREKQNTSSRQK
QIYNDLPSQNIQQPFSSATTSAHGKSPSEVSNVVPHSPKGPKAGFSASWKKQNTNGLSIQ
NNQQPLSSASTSGHKKPPSEVSASVGQGSRGPKAGVSASKKKQKNNGLSSQNSQQPSTSD
SMSGHPKPPAKVSTLVGYGSNMYGPYGPRGDSLKRQRGGGSG
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagaggctgaggaaaggagagcagcagcagcagcagcagcagcagcagcag
cggcggcggcagccacagcagcagcagcagcaacagcagcagcaggagaagaacaagccc
aatcggaaggtggccgagctgacgcggattcggatagccgagaggctcgagcagtttcgc
gcctccaggcagcaagtgttaacatttgatgagaacctgtcaaatcatgaacgagctgta
gtgcatgaagtctgcaggaagatgggaatgacatctaaaagctctgggcgtggcaatcaa
aggcgtgtttctatttacaagtctaaagggaagggggaaaactcagaagagaaggggagt
atgtctaatttgacattatctcaggaggctaaggagattttgaatgatctgttcataaga
tacccaccaggcgagggagggactagtgagcaaattgctgtaaaacatacagaaaaaagc
gaacgaagaaaagaaaggcagagagatgacatattttgcaggcctccaatggataaggca
gatatcacaaagaaggtggaatcactttccgctagattagagaaggctgcaaacctgaaa
cagattactgaagagagatctaagcttcccattgcatccttcagggatgtcatcacgtca
tctgtagagtgtcatcaggtagttcttatatctggtgagactggatgtggaaagaccaca
caggtccctcagtttcttctggactcgatgtgggctaagggtgaggcgtgtaagattgtt
tgtacccaacctcggcgaatctctgcaacgtccgttgctgagagaatatcttctgaaaga
ggagaaaatattggagaggatattggatacaagatacggctggaaagcaagggagggaag
cactcatcaattgttttttgcaccaatggagtcttactgagagtgttagtttcaaaagga
gctggtgaatcaaatggtgaagcctccaataggcacttgaagcatcctttatccgacata
actcacataattgtggatgaaattcatgaaagggatcgcttctcggattttatattggca
attctaagagacatgcttccatcgtacccacacctgcgtctgatactaatgagtgccact
ctcgatgctgaacggttctccaactattttggtggctgcccagttattcgtgtcccgggt
ttcacttaccctgtcaggattttttacttggaggatgtactgacaatgcttaaatcaata
caagagaatcacctggattccactacattcggcatcactgatgaaaaccaaatgctgaca
gaggaagataaggttgctttagatgatgctattaatttggcatggtccagcgatgacttt
gatccgctacttgatttagtttcttcagaaggaacgccacaaatttataattaccagcat
tccttaactgggatgacacctctaatggtgtttgctggtaagggtagggcaggtgaggtc
tgcatgctgctctcttttggtgcagactgcctcttaaaagcaaaggatggtgcaactgca
ctggattgggctgaaagtcaaaaccaacaagaagctgctcaattgattagaaagcaaatg
gagagtacctcatcaaattcagtggatgaacaactgttgcttgatagatatctttcgaca
gttaatcctgaactaatcgatgtagttcttatagagcagttactgaagaaaatttgtact
gattcaaaagatggagcagtccttgtttttcttccaggatgggatgatatcaatagagcc
aagagtagattacttatgtcccccttcttcaaagatacttctaagtttgccattttacct
cttcactccatggtcccgtctatggaacagaaaaaggttttcaaacgcccacccgttggt
tgccgcaaaatcatcttgtcaactaatattgctgagactgctatcaccatagatgatgtt
gtttatgttattgatagcggtcgaatgaaagagaaaagctatgatccttataacaacgtg
tcgactctccagtcttcatggatttcaaaagccagtgcaaagcaacgagagggtcgggca
ggccgttgtcaacctggtacatgctatcatctttattcgaaattacgagcagcttctttg
cctgatttccaagtacctgagatcagaagaatgccaattgaggaactttgtctccaggtg
aagttgcttaatccaaatggcaaccttgaggactttttaatgaagactttggatcctccg
gtttttgaaaccatacggaatgcagtcaatatactcaaggatattggtgctttgtctctt
gatgaaaaattgacggaccttgggcagaagcttggttctctgcctgttcatccactgaca
agcaagatgcttctctttgccatattgatgaactgccttgacccagcattgactcttgca
tgtgcttctgactacagggacccattcaccctgccaatgttaccaaatgaaaagaaaaag
tcagcagcagctaaagctgagctggcttcactgtactatgggcagagtgatcaactagca
gttgtagcagcatttgagtgctggaagaaagctaaggacaagggtcaagaagcacgcttt
tgttctcagttctttgtatcctctagcactatgagaatgttatcgggcatgcggaaacag
ctccaaatggagctgacacgcaatcggttcattcctgaggatgtttctacttgtagcttg
aatgcgcatgatccaggtataattcatgctgttctggttgccggtttatatccatcggtt
gggagattagtaccgcgtcatagaagtggaaaacgttttgtagagactgctaatggtgat
agagctcgtttacatcctcattcaataaactacaagttatcattcttgaaaactgatgat
cagcccttgttcatgtatgatgagataacacgtggggatgggggtactcttttacgaaat
tgcaccgtggtggggccacttccagttttgttgctgggtactgaaattgccgtggctcct
gggaactctgacgatgacgatgacgatgacgatgacgatgacgaagacgatggtgatgat
ggtgaaagtgactatgatgaagacagcgatgagaaccaaacaaaaaataacgacaactca
caaggaagagatggagaacggaccatgtcctcccctgatgcaccagtaacagtggttgtt
gatcgatggcttccctttggttccactgcacttgatattgcgaggatatactgcttgaga
gagcaactgtctgcggcaatcctattcaaggtcattcatccacatgaggttcttcctcca
gtccttggggcttatgtatatgcaacagcgtgcatcctatcttatgatggtttatcaggg
atcttgtcaccctcaggacatgttgactcatcaatgtcaatggtgaaggcagatgagagt
gatgaactcatgccagataggaggaaacttggtgagttccttagattcctgatgaggcct
gacagacatcataactcaacatattcatactgggaagctgggtcatctctgtacacagaa
aagcagaacaataatgacttgtcaaatcaaaatattcagcagccattttctccagcttcc
acaagtgtgcaagcgaaacctccatctgaagattctactacagttggccatggtccaaga
ggtcagaagccagggttagctgcatccagggaaaagcagaatacttcatccaggcaaaaa
cagatatacaatgacttgccaagtcaaaatattcagcagccattttcttcagctaccacg
agtgcacatggcaaatctccatctgaagtttctaatgtagtgccccatagtccaaaaggt
ccaaaagctgggttttctgcatcctggaaaaagcagaatactaatggcttgtcaattcaa
aataaccaacaaccattgtcttcagcttctacaagtgggcataagaaacctccatctgaa
gtttctgcttcagttggccagggttcaagaggtccgaaagctggggtatctgcatcaaaa
aagaagcagaaaaataatggcttgtccagtcaaaatagccaacagccttcaacttcagat
tctatgagtgggcatccgaaacctccagctaaagtttctactttagttggttatggctca
aatatgtacggaccttatggtccgaggggagattctcttaagaggcagcgtggtggtggc
tctggttaa
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integrated database retrieval system
