Eucalyptus grandis (rose gum): 104442401
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Entry
104442401 CDS
T03547
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104442401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
egr04131
]
104442401
Membrane trafficking [BR:
egr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104442401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
ANAPC4_WD40
WDR55
TPR_VPS8_2
WD40
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_WDHD1_1st
WD40_Prp19
zf_RING_Vps8
MinC_N
zf-RING_2
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
104442401
NCBI-ProteinID:
XP_010054136
LinkDB
All DBs
Position
4:39007386..39019508
Genome browser
AA seq
1928 aa
AA seq
DB search
MTEQQQQQLQLPLPQPRMELDVDSFLISQNDPHRHDDDDDDDDGEDDGEDWSSFPHRTIE
EILNDSLSDSSPSPSPPPSPPRPRRQPSAGAVSLDDDSRSPPGPTPPLPDDNRPASSNSR
PKPPDSAPWAPSSSRQLPSLFGGVRSNAKPGAALAAAAAASRSLPTPHAAALKSRRALLA
PSSSSSSSASSFPSISNSHDALDSSVEALRGLDGQLTLQPKDDAEGDDSTMGDFQSALGH
AVDPAPEDRLDAESPALEEEAEEEEEEEALVSSPPAQQDSTVESHADSAPQVDQVADGSP
VEHEIIADDAMALSIANDPREKDAGNEGALQKHGLSEDRDNSSSAADIDELVQERIEELE
SKRMSEKPEKKPQKKPLELAEEIERKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDV
DSDNAITRTISSQAFRRDHGSPQVLRVHPNFVAVGMSKGVILVLPSKYSATQADNMDAKM
MILGLQGDRSHASVTSMCFNQQGDLLLAGYGDGHITVWDLQRGSAAKIISGEHTAPVVHT
LFLGQDSQVTRQFKAVTGDSNGLVLLHTLSVVPLLNRFSVKTQCLLDGQKTGTVLSASPL
LYDEFFGVVSTSSLGNSSASSSSIGSMMGGVVGPDAGWKLFNESTSLVEEGVVILVTHQT
ALVVRLSPALKVYATLARPDGVREGSMPHTAWKCMVQAYGSPDENAPEAATERVSLLAIA
WDRKVQVAKLVNSELKVYGKWSLDSTAVGVAWLDDQMLVVLTVDGQLCLFSRDGNMIHQT
SFALDGVAGDDLMAYHTHFNNLFGNPEKAYHNSMAVRGASIYILGPVHLVISRLLPWRER
IQVLRKAGDWMGALNMAITLYDGQAHGVIDLPRTLQAVQDAIMPYLVELLFSYVDEVFSY
ISVAFCNQIGKVQQMDDHMTRSSSVRNEIKEQFTRVGGVAVEFCVHINRKDILFDEIFSR
FVAVQHRDTFLELLEPYILKDMLSSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLD
FNQVVKLCREHGLYCALVYLFNRGLDDFRSPLEELLVVFCKSPKESAAALGYRMLVYLKY
CFSGLAFPPGHGSISPTRLPSLRAELLQFLLEKSENSRVLSEGVYCNLYHLLELDTEATL
DVLRCAFVEDDIQKSNFSAHDSANQVVEMGFDPTRENKVVQDLVNALICILDEDIFQVDG
QGGSNNKSADAWPSRIDIGHVYEFLASFVTRERAKIPKDILNRILEHLTSENASLPGEER
NKMREKQVLSLLETVAENQWDTSYVLCLCEKARFYEVCGYIYTIQDQYIAALDSYMKDVD
EPIHAFAYINNALLHLNDTEHADFHSAVLSRIPALVDLSREGTFLLVIDHFSTEGSQILS
ELNSHPESLFLYLKTIIEVHFSGTLDFSCLRRRNAGTPDGTSGHARLRGVETYLGRISDF
PKYLRNNPVHVTEDMIEHYFELLCRYDRHSVLKFLETFDSYRVEHCLQLCQEYGITDAAA
FLLERVGDVGSALLLTLSSLSEKFEKLDAAMIDATSEATRGNSYSLGHFSTVLRMEEVND
IRRTLDLCIGLCQRNTPRLNPEESETLWFKLLDSFCEPLLGLPTGKFTSTEVNNDGIHSK
SQDDDASPIIKWTLNSHGGAPILRKLLSQFIKEIVEGMIGYVRLPTIMSKLLSENGSQEF
GDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYTMSVLKKGASHGYSPRSIVCCICNCL
LNKNSTSSTVRVYNCGHATHIQCEITESETSSKGLSSGCPVCLPKKKSQKSGSKSVLGEN
GLVSKLSSRHQQLQGANLLVSHERINDGLDNTYGLQQISRFDILNSLQKGQESIQIESLP
QLRLAPPAVYHEKVKKATDFLTGESSSDLTKAEKESRKRQLRDLKAKGSSIRFPLKTNIF
GKERTSSR
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcagcagcagcagcagctccagctccctcttccccagccccgcatggagctc
gacgtcgattcttttcttatttcccagaacgacccccaccgccacgacgacgacgacgac
gacgacgacggcgaagacgacggagaagactggagttccttccctcaccggaccatcgaa
gaaatcctcaacgactccctctccgattcttctccttctccttctccccctccgtccccg
ccccggccgcgacgccaaccctccgccggcgccgtctccttggatgatgactccagatcc
ccacctgggcccacccctccgttgcccgacgataacaggcctgcttcttccaattctcga
ccgaagcctcccgattccgccccctgggcaccctcttcctctaggcagctgccttccctg
tttggcggggtgaggtccaatgccaagccgggggctgctctcgccgccgccgccgccgcc
tcccgctcgctccctacccctcacgccgccgctctcaagtcccgccgggccctcctcgct
ccttcctcctcctcctcctcctccgcctcgtcttttccttccatctccaattcccatgac
gccttggactcttccgtcgaggcgctccgtggcttggatggtcagttgacgttgcagccc
aaggacgatgccgagggcgatgatagcacgatgggcgacttccaatccgctttagggcat
gccgttgatcctgctcctgaagatcgccttgatgcggaatctcccgcacttgaggaggag
gcggaggaggaggaagaagaagaggcattggttagctcccctcctgcccaacaagactcc
actgtcgagtcccatgcagattccgctcctcaggtcgaccaggtcgctgacggttcgcct
gtggaacacgagataatcgccgacgacgctatggcactctcaattgccaacgatccccgc
gagaaggatgcaggaaacgagggagctcttcaaaagcatggcctttctgaagatagggat
aattcgagctcagcggctgacatagatgagctcgtccaagagagaattgaggagttggaa
agcaagaggatgagcgagaagcccgagaagaaaccgcagaagaagcctctcgagttggct
gaagagattgagaggaaacaggcgtccacaggtctccactgggaagagggtgcagcggct
cagccaatgaggcttgagggtgtccgcaggggatccaccacattgggatacttcgatgtt
gattccgacaatgctattacccggaccatttcttctcaggcattcagacgtgaccatggc
tccccccaagtcttgcgggttcatcctaatttcgttgccgtcggcatgtcaaaaggggtc
atccttgttctgccttctaagtattctgccactcaggctgacaacatggacgccaagatg
atgattcttgggttgcaaggggatcgatctcatgcctcggtaacttccatgtgcttcaat
cagcagggagacctgctcttagctggttatggtgatgggcatattacagtctgggatttg
cagagaggctcagccgccaaaattattagtggggaacacacggcaccagtagtacacaca
ctgtttctaggccaggattctcaagttactcgtcaatttaaggcagttacaggtgatagc
aatggactggttttgttgcatactttatcagtagttcccttgcttaatcggttctccgtc
aaaacacagtgtctccttgatggtcaaaagactgggactgtcctatcagcatcacctctt
ctgtatgatgaattttttggagtggtttcaacgtcctccctggggaacagtagtgcttca
agtagcagtattggtagcatgatgggtggtgttgttgggccagatgctggttggaaacta
ttcaatgaaagcacctctttggtcgaagaaggtgtggtcatattggtcacccaccaaact
gctctggtggtaagactcagtcctgctttaaaagtttatgcaacattggctaggccagat
ggtgttcgggaggggtccatgccacatactgcatggaagtgcatggtgcaagcatatggt
tctcctgatgaaaatgctcccgaagcagccactgaacgagtctcattgcttgctatagct
tgggatcggaaagttcaagttgctaagctggtcaactcggaactaaaagtttatgggaag
tggtcccttgacagcacggccgtaggagttgcctggttagatgaccagatgctcgtggtt
ctgacagttgatggacagctttgcttattctcgagggacggtaatatgattcaccagaca
agttttgctcttgatggtgttgctggagatgatctcatggcatatcatacacacttcaat
aatctgtttggaaaccctgagaaagcttatcacaactctatggctgtgaggggcgcgtct
atttacatccttggacccgtccatcttgttatttcacgcctcctaccttggagggaaagg
attcaggttttacggaaagcgggtgattggatgggtgccttgaacatggctatcacactg
tatgatggccaagcccatggggtcattgacctccctaggacactgcaagctgttcaagat
gccataatgccttacttagtggagttgcttttttcgtatgtagatgaggtattttcttat
atttcagtggcattttgcaatcaaattggcaaagtacaacaaatggatgaccacatgact
agaagcagttccgtacgtaatgaaataaaagaacaatttacccgtgtcggtggtgttgcc
gttgaattttgcgtacacatcaacagaaaggacattcttttcgatgagatcttctccaga
tttgttgctgttcaacatagagacacattcttggagcttttggagccgtatatattgaag
gatatgctcagttctctacctcctgagataatgcaagcattggtggaacactatagcagc
aaagggtggttacagcgagttgaacagtgtgtccttcacatggacatatcttcattggat
ttcaatcaggttgttaaattatgccgggagcatgggttatattgtgcattggtgtatctt
ttcaaccgaggattggatgatttcagatcacctctggaggagttgttggtagtcttttgc
aagagtccaaaggagagtgctgctgcccttgggtacaggatgcttgtttacctaaagtat
tgcttttctggtcttgctttccctcctggacatggaagtatttccccaacccgccttccc
tctcttagggcggaacttttgcagtttttactggaaaagtcagaaaattcaagagtgttg
tctgaaggagtctactgtaatttgtatcatctcttagaattagacactgaagctacttta
gatgttttaagatgtgcctttgtagaagatgatatccaaaaatccaatttttctgcacat
gactcagccaaccaagtcgtggagatgggatttgatcctaccagggaaaacaaagtggtt
caggatttggtaaatgctctcatttgtatccttgatgaggacatctttcaagtagatggt
caaggagggtctaataataaatctgcagatgcctggccttcaagaatagacattggacac
gtttatgagttccttgcatcttttgttacgcgtgaaagagcaaagattccaaaagacata
ttgaaccggattttagagcacttaacatcagaaaatgcttctcttccgggagaagaacgt
aataaaatgagagaaaaacaggtactttcccttttggaaacagtggctgagaatcagtgg
gacacgtcttacgtcttatgcctatgtgaaaaggcacgattttatgaggtttgtggctat
atttatactatccaagatcagtatattgctgctttggatagttatatgaaagatgtggat
gaacctatacatgcctttgcctacatcaacaatgctttgctacatctcaatgacactgag
catgctgattttcactcagcagttctttctcgaattccagcactggttgacttgagtaga
gaaggaacattcttgttggttattgatcatttcagtacagaaggttcacagattctctct
gaactgaactcccatccagaaagcctttttctatatctaaagacaataattgaagtacac
ttctctgggacccttgatttctcatgcttgaggaggcgtaatgctggtacccccgatgga
acaagtggacatgctcggttaagaggagttgagacgtacttggggagaatctctgatttc
cctaagtatttgcgcaacaatcctgttcatgtcactgaggacatgattgaacactatttt
gagttactatgtcgatatgaccgccattcagttcttaaattcttggagacatttgatagc
taccgggtggagcactgtttacaactttgtcaggagtatggaattacagatgcggctgca
tttttgttggaaagggttggtgatgttgggagtgctctcttgcttacactgtcgagcctc
agtgaaaaatttgagaaactcgatgctgctatgatagatgccacttctgaggcgacacga
ggcaattcctatagcttgggacatttcagcacagtattaagaatggaggaggtgaatgat
atacggagaacattggatctttgtattggattatgccagcgtaatacacctcgtttgaat
cctgaagagtcagagaccctgtggttcaaattgcttgattcgttttgcgaaccattactg
ggcttacctactggcaaatttacatccacggaagtgaataatgatggaatacatagcaaa
tcccaggatgatgatgcatcacctataattaaatggactctgaattctcatggaggtgct
cctattttgagaaaattgttatctcaattcatcaaagaaatcgtcgagggaatgatagga
tatgttcggcttccaactatcatgtctaaactcctttctgaaaatggtagccaggagttt
ggtgatttcaaacttaccattttagggatgctcgggacctatggctttgaaagaagaatt
ctggatactgctaagtccttgatagaggatgacacattttatactatgagcgtgctgaag
aaaggagcatcccatgggtattcccctcgaagtatagtgtgttgtatatgcaattgtctt
ctcaacaagaattcgactagctccacagttcgtgtgtataattgtggccatgccactcat
atccaatgtgaaattacagaaagcgaaacctcaagcaaaggattgtcttctgggtgtcca
gtctgtttgcctaagaagaagagtcagaaatcgggaagtaaatcagtccttggagagaat
ggtctagtgagtaagctctcatcaagacatcaacagttgcaaggggctaacctactggtt
tcacatgagagaatcaacgatggactagacaacacttacggccttcagcaaatatcaagg
ttcgacatattgaatagtcttcagaagggccaggaatcaattcaaattgaaagcctacct
cagttgaggctcgcaccgcctgctgtttaccatgaaaaggtgaagaaggcgactgacttt
ttaacaggagaaagtagcagtgatcttactaaggcagaaaaagagagtagaaagagacag
cttagggacctcaaagcaaagggatcatcaattcgttttccactgaaaacaaatatattt
ggaaaggagagaaccagcagccgctga
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integrated database retrieval system
