Eucalyptus grandis (rose gum): 104442404
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Entry
104442404 CDS
T03547
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
egr03036
]
104442404
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104442404
microRNA pathway
RISC loading complex
104442404
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
Helicase_C
DND1_DSRM
DEAD
ResIII
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
Mito_fiss_reg
Motif
Other DBs
NCBI-GeneID:
104442404
NCBI-ProteinID:
XP_010054145
LinkDB
All DBs
Position
4:complement(39044410..39058814)
Genome browser
AA seq
1945 aa
AA seq
DB search
MEEEDKSRALGNGDGAHSSYWLDACEFPPCDVVPDFVDFDAVDTPADAAHHTLLNANDFF
GGIDRILDSIKSGDALPPPPSPPPPPSPPPPPPLPPPPPPPPPPSSEEETRAFVDAAPGC
LVDCDSQSLSSNGGEQNGFQRHDDRESQREDLSREERSNKRSRCGAHGGLALHAMKGNPY
HRERDKERQSGLKRLRDWDEFDRRDRDHIRRREHRSGSGRRDGREREWRDREANGYWERD
RLGSNEIVFRLGAWEADRSREEKSRIDNIQDCNGRVDDKPEDHKERFPEEHARQYQLDVL
EQAKRKNTIAFLETGAGKTLIAVLLIKSVCADLQKLNRKMLSVFLVPKVPLVYQQAEVIR
ERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMEAINLLIL
DECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESK
LDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQIKQMEVAVEEAAQSSSRRSK
WQFMGARDAGAREELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVALSFL
TALQNDERTNYQLDVKFQESYLSKVVSLLQCQLSEGAAFEKDMMSVESGVRLDVTNIDEM
EEGELPDSHAVSGGEHVDVIIGAAVADGKVTPKVQALIKILLGYQHTEDFRAIIFVERVV
AALVLPKVFAELPSLSFIKCASLIGHNNSQEMRTCQMQETIAKFRDGRVTLLVATSVAEE
GLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHAAFLRNARNSEET
LRKEAIERTDLSHVKDTSKLISQEAILGTVYQVESTGAIVSLNSAVGLIHFYCSQLPSDR
YSILRPEFIMERHEKPGGPTEYSCRLQLPCNAPFEKLEGPICSSMRLAQQAVCLAACKKL
HEMGAFTDMLLPDKGSGEEGKTVDQNDEGDPLPGTARHREFYPEGVADILQGDWILHGRD
GCSDSKLLLLHMYAVKCTNIGSTKDTFLTQVSGFSVLFGNMLDAEVLSMSMDLFIARTMI
TKASLLYRGSISITENQLKSLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPLVGDKS
IDPLKEIDWDLVDEIVGTNAWSNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFG
LKSHPTYGIRGAVAQFDVVKAAGLLPQRDAFEMEENQDLTKDKLMMADSCISSNDLVGRI
VTAAHSGKRFYVDSICYDMTAENSFPRKEGYLGPLEYSSYADYYRQKYGVELVYKQQPLI
KGRGVSYCKNLLSPRFEHSEGESEEILDRTYYVFLPPELCLVHPLPGSLVRGAQRLPSIM
RRVESILLAIQLKDVIDYSVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSKFLF
LRYPQKHEGQLTRMRQQMVSNMVLYEYALNKGLQSYIQADRFAPSRWAAPGVLPVFDEDT
KDETSLFDMEHSLAEVGGRSDVIGAEFDDESIEDGEVESDSSSYRVLSSKTLADVVEALI
GVYYVEGGKNAANHFMKWVGIRVEFDNDEKECAIRPSNVPESILRSVNFDALESALNLKF
NDRGFLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAA
AVNNENFARVAVKHKLHLHLRHGSSALEKQIRDFVKEVQDELSKPGFNSFGLGDCKAPKV
LGDIVESIAGAIFLDSGHDTAVVWKAFQPLLHPMVTPDRLPMHPVRELQERCQQQAEGLE
YKASRNGNLATVEVFVDGVQVGVAQNPQKKMAQKLAARNALAVLKERDTSDAKVNNDGKK
KNGNQTFTRQTLNDICLRRNWPMPLYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGE
PMPSVKKAKDSAAVLLLELLNKWYS
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggataagtctagggctttggggaatggggatggagcccattcttcttac
tggctcgatgcttgtgagttcccgccctgcgacgtcgtccctgacttcgtcgatttcgat
gctgtcgacacccccgccgacgccgcccaccataccctcctcaacgccaacgacttcttc
ggaggtattgaccgcattctcgacagcatcaaaagcggcgatgcgctccctcctcctcct
tctccccctcctcctccttctcctcctcctcctcctcctcttcctcctccccctcctcct
cctcctcctcctagctctgaggaggagactcgtgcttttgtcgacgctgcccctggatgc
ctcgtcgattgtgactctcagtccttgtctagcaatggaggagagcaaaacgggtttcag
aggcacgatgaccgggaaagccaaagagaagacctctctcgcgaggaaaggagcaataag
agaagcaggtgcggcgcccacggtggcctcgctctccacgcgatgaaggggaatccttac
caccgggagagggacaaggaaagacagtcgggcctgaagaggctgcgtgattgggatgag
ttcgacaggagagatagggatcacatcaggagaagagagcaccgcagcggttctggacga
cgggatgggagggagagggaatggagagatagggaagcgaacggctactgggagagggac
cgcctaggctccaatgagattgttttccgattaggtgcttgggaagctgatcgtagcaga
gaggagaagtccagaattgacaatattcaggactgcaatgggagggtagatgacaagcct
gaagatcataaggagagatttcctgaggaacatgcccggcaatatcagttggatgttctt
gaacaggccaaaaggaagaacacaatagcttttctggaaacaggggcagggaagacctta
atcgctgttctgctcatcaaaagtgtttgtgctgatctgcagaagctaaacaggaaaatg
ctatctgtatttctagtgcccaaagttccgcttgtttatcagcaagccgaagtaatccgc
gagcgtactggttaccaagttggtcattattgtggtgaaatgggtcaggacttttgggat
gctagacggtggcaacgtgaatttgagacaaagcaggttttggtgatgaccgctcaaata
ctgttgaacatcctaaggcacagtataataaaaatggaagctataaatctccttatattg
gacgaatgccatcatgctgtgaagaaacatccatattccttggtgatgtctgagttctat
cataccacacccaaagagaagagaccgtctgtttttggaatgactgcttcacctgttaat
ttaaagggcgtttcaagtcaagtggattgtgcaatcaaaattaggaatcttgaaagcaag
cttgattctgttgtctgtaccataaaagatcgaaaggagctggaaaagcatgttccaatg
ccatctgaagttgtcgtggagtatgataaagcagctagtttgtggtccctccatgagcaa
ataaaacaaatggaagtggcagttgaagaagctgcacaatctagttctaggagaagcaag
tggcaatttatgggtgcccgtgatgcaggtgcaagggaagaactgcgccaagtttatggt
gtttctgaaagaacggagagtgatggtgctgctaacttaatacaaaagcttagagcaatc
aattatgctcttggtgagctgggacaatggtgtgcttacaaggttgcgctatccttcttg
acagctctgcagaatgatgagagaacgaattaccagctcgatgttaagtttcaggaatcc
taccttagtaaagttgtatccctcttgcaatgccaactgtcagagggggctgcttttgag
aaagatatgatgtccgtggaaagtggtgtcagattggatgtaactaatattgatgagatg
gaggaaggagagcttcctgacagtcatgctgtttccggtggagagcatgtggatgtcata
ataggagcagctgtggctgatggaaaggtgactccaaaagtgcaggcattaattaaaata
cttctcggataccaacatacagaggattttcgggcaattatatttgttgagcgtgttgtt
gctgctttggttcttcctaaggtgtttgcagagcttccatctttaagttttatcaaatgt
gcgagcttgattgggcataataatagtcaggaaatgaggacatgccaaatgcaggagact
attgccaaattccgagatggtcgtgtgacattgctggttgcaactagcgttgctgaggaa
ggtcttgatatacggcaatgcaatgttgtaattcgatttgaccttgcaaaaactgttttg
gcatacattcagtcacgtggccgtgctagaaagcccgggtcagattacatcttgatggtt
gagaggggaaatttgtctcatgcggcatttttgaggaatgcaaggaatagtgaggagaca
ctgcgaaaagaagcaattgaaagaactgaccttagtcatgtgaaggacacatccaagtta
atttcacaggaggctatactaggtacagtgtaccaggtagagtcaactggtgctatcgtc
agcttaaactctgctgtgggacttattcatttctactgctctcagcttccgagtgacaga
tattcaattcttcgtcctgaatttatcatggagaggcatgagaagcctggaggccccacc
gaatattcctgcaggcttcagctcccttgcaatgcaccttttgaaaaacttgagggccct
atatgtagctcaatgcgacttgcacaacaggctgtttgcttggctgcttgcaagaagctc
catgagatgggagcattcactgacatgctattaccagataaaggaagcggggaagaaggg
aaaaccgttgaccagaatgatgaaggagatcctcttcctggcactgcccgacatagggag
ttttatcctgagggtgtggctgacattctccagggagactggatcttgcatggacgagat
ggttgcagtgactccaaattgcttcttcttcatatgtatgctgtcaaatgcacaaatatt
ggctctacgaaggatacgtttttaactcaagtttcaggcttttctgtactgtttggaaat
atgctggatgcagaggtgttatcgatgtccatggatctatttatcgctcgaaccatgata
acaaaggcatctcttctttataggggctcaattagtataactgaaaatcagttaaaatct
cttaaaagctttcatgtacgattgatgagcattgtgctggatgtggatgttgaaccttca
accactccatgggatcctgcaaaggcttatttatttgtccctttggttggcgataaatct
atagatccacttaaagagattgactgggatctggtcgatgaaattgtcggaacaaatgca
tggagcaatccacttcagagagcccggccagatgtgtacctaggtacaaacgagcgtaca
cttggtggggacagaagggagtatgggtttgggaagttgcggcatggtatggcttttgga
ctcaagtcccacccaacttatgggattagaggagctgtagcacaattcgatgttgtgaaa
gctgctggattgcttcctcagagagatgcctttgaaatggaagagaatcaggacttaacc
aaagacaaattgatgatggctgattcttgcataagttctaatgatttggtgggaagaatt
gtgacggctgcacattctggaaagaggttttatgtcgactccatatgttatgatatgact
gcagagaactcatttccaagaaaagaaggctatcttggcccattggagtatagctcatat
gctgattattacagacaaaagtatggggttgaattggtctataaacaacaaccattgatc
aaaggacgtggagtgtcatattgcaagaacttactgtcgcctagatttgaacactcagaa
ggtgaatctgaggaaattctggacaggacatattatgtgttcctcccccccgaactctgt
ctagtgcatccacttcccgggtcacttgttcgtggagctcaacgattgccttcaataatg
agaagggtagagagcatactgcttgcaattcaactcaaggatgtaatagattattcggtc
cctgcttcaaagatcttggaagctttgactgcagcctcatgtcaggagacattctgttat
gaaagagcagagctccttggagatgcttacttaaaatgggttgtaagcaaatttctattt
cttagatatcctcaaaagcatgagggtcagctgaccagaatgaggcaacaaatggtgagt
aacatggtcttgtatgagtatgctttgaataaaggacttcaatcatatatccaagcggat
agatttgctccatctagatgggctgcaccaggagtgcttcctgtcttcgatgaggataca
aaggatgaaacttccttgtttgatatggagcattcacttgctgaagttggaggtaggtca
gatgtaattggggctgagtttgatgatgaaagcattgaagatggtgaagttgagagtgac
tcaagttcttacagagttctgtctagcaagacactagcagatgttgttgaagcattgatt
ggggtgtattatgttgaaggtgggaagaatgctgccaatcacttcatgaaatgggtagga
atacgggttgagtttgataatgacgagaaagaatgtgcaatcaggccatcaaatgtccca
gagagcatcctcaggagtgtcaattttgatgctttagaatctgcccttaatttgaagttt
aatgacagaggcttcttgatagaagctattactcatgcttcacgaccatcttctggagtc
tcttgctaccagcgcttagagtttgttggtgatgcagttctggatcatcttattacaaga
catttgttcttcacttatactgatcttccacctgggcgcttgactgatttacgagctgct
gctgttaacaatgagaactttgcacgtgtcgcggttaaacacaagctccatttacacctt
cggcatgggtccagtgccttggagaagcagatcagggacttcgtaaaggaagttcaggat
gaattgtcaaagccaggtttcaactcttttggtttaggggattgtaaagcaccaaaagtc
cttggcgatattgttgaatccattgctggtgctatattccttgatagtggacatgatact
gctgttgtgtggaaggcttttcagcccttgttgcatcccatggtcactccagatagactc
ccaatgcatcctgtcagggagctgcaagagcgctgccagcaacaggctgaaggcttggag
tataaagcctctcgaaatggcaacttggccacagttgaagtctttgttgatggagtacag
gttggggttgctcagaatccacaaaaaaagatggcgcagaaacttgctgcacgaaatgct
cttgctgttctgaaagaaagggatacatctgatgctaaggtgaacaatgatggaaagaag
aaaaatggtaaccaaacatttacgaggcagacactgaacgacatatgtttgcgtcgaaac
tggccaatgccattatataggtgtgtaaatgagggtggccctgcacatgcaaagcggttc
acgttcgccgttcgtgtaaacaccactgacaggggatggacggatgaatgtgtgggggag
cccatgccaagtgtcaaaaaggcaaaggattctgctgctgttcttctcttggaacttcta
aacaaatggtattcttga
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