Eucalyptus grandis (rose gum): 104443185
Help
Entry
104443185 CDS
T03547
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104443185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104443185
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104443185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
DUF7721
Motif
Other DBs
NCBI-GeneID:
104443185
NCBI-ProteinID:
XP_010054831
UniProt:
A0A059DHH6
LinkDB
All DBs
Position
1:41073895..41080572
Genome browser
AA seq
903 aa
AA seq
DB search
MTDDGGGGGGGDDAAMTDSAADRTDAQKARSLEDLAQALHASLSRLSASSRALPSERDFH
FYRNFDDFKAPVGEVAEKSASLLRSIGSSAAAAASGGGAAFPDDLEDAYDWLVSVNDEVL
ERFDASADEFRRVRKEEEESGKKIMEVDGGFQLVYGKKKNKAVQGSVDRAAADSVNGRGE
SSVKVANLKEKVGGQKPKVPFHIPTIRRPQEEFFISVNNSNQPFQHVWLPKSEDGQRFIH
PLEELSVLDFIDKPVASKEPVQPLPMENTPFKLVEEVRDLKEMAAKLRGVDEFAVDLEHN
QYRSFQGLTCLMQISTRTEDFVVDTLKLRVQIGPHLRAVFKDPTKRKVMHGADRDIIWLQ
RDFGIYVCNMFDTGQASRKLKLERNSLEYLLHHYCGVTANKEYQNADWRLRPLPPEMIRY
AREDTHYLLYIFDVMRNELLALPENPDDALMEVYKRSYDLCVQLYEKDLWTDTSYLSIYG
LQGAGFDAQQIAVVAGLYEWRDVIARAQDESTGYILPNKTLLEIAKQMPVTTGKLLRLVK
SRHPYVERNLASVVSIIRSSIQNSAAYEAMVELLKERRMAPENSLLANDASQSVHPETPS
EHNDKTVECTDSVSTICHSVGDRGNQEVISDHPAKDEKDLLNVDQSGDSTAKTQLLSSAN
VGAAASVQVLKKPGGAFGALLGKMGPKRKCNTEEKDKKETKLEKIRSSVNLPFHSFLGSE
EQPEALREEPAQASEAQNVLDLATSKAEDIIMLEENDNAEESPQDDSDTEKELEETDSTQ
PNLKTDEDDEAISLTDLSSSFQRCLESVKQNKKAGQVENSQETSGLVQVKPFDYEAARRE
VRFGVDKKDASGGDEGQKRLLKSRGRKNSSPADPFQKDDGSRLPQGRRRQAFPASGNRSA
TFR
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgacggaggcggcggcggcggcggagacgacgccgccatgacggactccgcc
gccgatcggaccgacgctcagaaggctcgctcgctggaggacctcgcccaggccctgcac
gcctcgctctcccgcctctccgcctcctcgagggccctcccctccgagcgggacttccat
ttctaccgcaacttcgacgacttcaaggccccggtcggcgaggtcgccgagaaatccgct
tccctgctgcggtcgatcggctcgtcggcggcggcggcggcctcgggcgggggcgccgcg
ttccccgacgatctcgaggacgcgtacgattggctggtcagtgtgaacgacgaggtcttg
gagcggttcgacgcctcggcggacgagtttcggagggtgaggaaggaggaggaggagagc
gggaagaagataatggaggtcgacggcgggtttcagctggtgtacgggaagaaaaagaac
aaggcggtgcagggctcggtggaccgagccgcggctgactcggttaacgggagaggggag
tcgagtgtgaaggtggcgaatttgaaagagaaagtgggcggacagaagcccaaggtgccg
ttccatatcccgacgataaggaggccgcaggaggagttctttatttcggtgaacaattcg
aaccagccgtttcagcatgtctggttgccgaagagcgaggacggacagaggtttattcac
ccattggaggagctctccgtgttggattttattgacaagccagttgccagcaaagagcct
gttcaaccgttgccaatggagaatacgccatttaagcttgtagaagaagttagagacttg
aaagaaatggcagctaaattgcgtggtgtagatgaatttgcggttgatttggaacataat
cagtatcgatctttccaaggcttgacttgcttgatgcaaatttccactagaactgaggat
tttgtggtggacactctaaagcttagagttcaaattgggccacatttgagggcggttttc
aaggatcctactaagagaaaggtcatgcatggagcagatcgagatataatatggcttcaa
cgagactttggcatatacgtatgcaacatgtttgatactggacaggcttcaaggaagctg
aaattggaaagaaatagtttggagtatctgctgcatcactattgcggagttactgctaat
aaagaataccagaatgcggattggagactgcgacctcttccacctgagatgataagatat
gctagagaagacacacactatttgttgtacatttttgatgtgatgaggaatgaattgctt
gccttgcctgaaaatccggatgatgctttaatggaggtgtacaagcgcagttatgattta
tgtgtgcagctttatgagaaagatctttggacagatacttcatatctcagtatttacggg
ttgcaaggggctggtttcgatgctcaacaaattgcggttgttgcagggctctatgaatgg
cgagatgtcattgctcgtgctcaggatgaaagtactggttatatactgccaaataaaact
cttcttgaaattgccaagcagatgcctgtgaccactggcaagttgctgcggttggtcaaa
tcaaggcacccatatgttgagcgtaatcttgcttcagtcgtcagcatcattaggagttca
atacaaaattctgctgcttatgaagctatggtggaactactaaaggagcgccgcatggca
ccagagaatagtttactggctaatgatgcatctcaatctgtgcatcctgagactccatca
gagcacaatgacaagacagttgaatgtactgattccgttagtactatatgccatagtgtt
ggtgatcgtggaaaccaggaagtcatttctgatcatcctgccaaagatgaaaaggatctg
ttgaatgtggaccagagcggagacagcaccgctaaaacacagttattgagctctgcaaat
gtaggtgctgctgcttctgttcaggtgttgaagaagcctggtggtgcttttggggctctt
cttggaaaaatgggcccaaaaaggaaatgtaacactgaagaaaaggacaagaaagagaca
aagctggagaaaatcagatcttcagtgaacctcccattccactcctttttggggagtgag
gagcaaccggaagcacttcgagaagagcctgcccaagcttccgaagctcagaatgttcta
gatcttgctacctccaaggcagaagatatcataatgttggaagaaaatgacaatgcggag
gaatcaccacaagatgattctgacactgaaaaggagttggaggagactgattctacgcaa
cctaatcttaaaactgatgaagatgatgaggcgatttctctcacagacctgtcatcgagc
ttccagaggtgcttggaatcggtcaagcaaaacaagaaggctggacaggtggagaactct
caagaaaccagtggccttgtacaggtgaagccatttgattacgaagcagcgaggagagag
gtcaggtttggggtggataagaaggacgcatcgggaggagatgaaggtcaaaagcgtctg
ttaaaatccaggggaagaaaaaatagctcacctgcggatccattccaaaaggacgacggg
agccggctcccacaaggtagacgtcgccaagctttcccagcatctgggaatcggagtgcg
actttccggtga
DBGET
integrated database retrieval system
