Eucalyptus grandis (rose gum): 104443314
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Entry
104443314 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104443314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104443314
03016 Transfer RNA biogenesis [BR:
egr03016
]
104443314
Enzymes [BR:
egr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
104443314
Messenger RNA biogenesis [BR:
egr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
104443314
Transfer RNA biogenesis [BR:
egr03016
]
Prokaryotic type
tRNA degradation factors
104443314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
104443314
NCBI-ProteinID:
XP_039155188
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All DBs
Position
1:complement(41153341..41169114)
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AA seq
893 aa
AA seq
DB search
MLVNSGGVNARPHSARSPFPRFLNGRRHSAIPDFPRSLRARSSKFRSLSLLLPVASSSKP
SPVRAAAGAEAGGSASRSMLLPDSPGLSPSKSPSAIDTTIFRSRRTSGGFYKREGRTKDH
EVLICRLIDRPLRPTMLKGFYHETQVLSWVLSYDGLHSPDSLAVTAAGIAVALSEVPNSK
AIAGVRIGLVGGKFIVNPTTKEMEESDLDLLLAGTDSAILMIEGYCNFLSEEKLLQAVEV
GQEAVQAICKEVDALVKKCGKPKMLDAIKLPPAELYKHVEDIAGDELLKVLQIKGKVPRR
KSLLSLEDEVLTILTEKGYISKEATFVAAETIPDMEVDEDEDEEVVVDGEIDEGDVHIKP
VSRKPTPLFFSEVDVKLVFKEVTSKFLRRRIVEGGKRSDGRTPDEIRPINSRCGLLPRAH
GSALFTRGETQALAVATLGDRQMAQRVDNLVDDNELKRFYLQYSFPPSSVGEVGRMGGPS
RRDIGHGMLAERALEPVLPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPV
KSSIAGIAMGMVLDTQEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKV
AGITLPIMRNALLQARDGRKRILVEMAKCSPPPSESLSKHAPLIHVMKVRPEKINLIIGT
GGKKVKSIIEETGVEAIETQEDGVVKITAXDLSSIERSKAIIANLTMVPTIGDIYRNCEI
KSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDAFKVGDRVDVKLIEINDKGQLRLSR
RALLPDPDPKEFGTQQTAGAAGEESASAPSTDKDADIEQTKDEVSVAKVTGSTRSISTEQ
TIQPRKKAIKRLVSPAKDKAYISKERQKKNSSKAVSISANDESTLVNGEAKIG
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtgaattcaggcggcgtcaacgccagacctcactccgctcgctcgccgttcccc
cgcttcctcaatggccgccgtcactccgcaatcccggacttcccccgctctctccgcgcg
aggagctccaagttccgctccctgtcgctgctgctcccggtcgccagctcctccaagccg
tcgcccgtccgcgccgccgcgggagctgaggccggtggctcggcgtctcgttcgatgctt
ctcccggattccccgggcctttctccgtcaaaatccccgtcggcgatagacacaacgatt
ttccgcagcaggcggacaagtggaggtttttacaaacgagagggaaggacgaaagatcac
gaggttcttatttgtagattgatcgataggcctttacgtccaacaatgctgaagggcttc
taccatgaaactcaagttttatcctgggttttgagctatgatgggttgcatagccctgat
agtttagcagtcacagcagctggaatagcagtagctctttcagaagtgccgaattcaaag
gctattgcaggagtgcggattggcctggtaggaggtaagttcattgtcaaccccacgacg
aaggaaatggaagaatctgacttggacttgctgctagctggcactgacagtgcaatattg
atgatagagggttactgcaatttcctctcggaagagaagttgctgcaagctgttgaagtt
gggcaggaagctgtgcaagcaatttgcaaagaggtggatgctttggtcaagaagtgtggg
aagcccaagatgcttgacgcgattaaattaccccctgccgagctatataagcatgttgaa
gatattgctggggatgaattattaaaggtgctgcagatcaagggtaaagtacctagaagg
aagtcactattgtctttggaggacgaggttctgactatacttacagaaaagggatatatc
agtaaagaggcaacttttgttgctgctgaaacaattccagacatggaagtggatgaagat
gaggatgaagaagttgttgtagatggagaaattgatgaaggggatgtccacataaagcca
gtctcacgaaaacccactcctctgtttttctccgaggttgatgtgaagctggtgtttaaa
gaagttacatctaagttccttcggagacgtatagttgagggaggaaaaaggagtgatggt
cgaacccctgatgaaataaggccaattaactcaaggtgtggattgcttcctagggcacat
ggaagtgctctttttacacgtggcgaaacacaggcattagcagtggctacccttggtgat
aggcaaatggcacaaagggtggacaaccttgtggatgacaatgaattgaagaggttctac
cttcagtattcatttcctccttcaagtgttggggaagttgggcgtatgggaggtcctagc
agaagagatataggtcatggaatgcttgctgagagagcactagaacctgttttgccttcc
gaagatgactttccttacaccattcgtgttgagagtaccatcactgaaagcaacggttct
tcgagcatggcatctgtttgtgggggctgcttagctttgcaagatgctggtgttccagtt
aagagctctattgcagggatagcaatggggatggtgttggacacacaggaatttggtggt
gatggcacccctcttattctctctgacattactggctctgaagatgcatctggagacatg
gattttaaggtagctggaaatgaagatggcataactgcatttcagatggacataaaggta
gcgggtattacattgcccattatgaggaatgcacttctacaagcaagggatggtcggaag
cgtattcttgtggaaatggcaaagtgctcacctcccccttctgaaagtctttcaaagcat
gctccactgattcatgtgatgaaggtcagaccagaaaaaatcaatttgatcattggtact
ggtgggaagaaagtgaaaagcatcattgaagagaccggagtagaggccattgaaacccaa
gaggatggagtagtgaaaattactgctnaagacttgtctagtatagagaggtctaaagcc
ataattgctaatctgacaatggtgccaacaattggtgacatatataggaactgtgagatc
aaatctattgcaccttatggagtttttgttgagatagctccaggcagggagggtttgtgc
catatcagtgagttaagttccaattggctcgccaaggctgaagacgcttttaaagttgga
gaccgtgttgatgtgaaacttatcgagatcaatgacaagggacagctccgccttagtcgc
cgcgcattacttcctgatccagatccaaaggaatttggcacccagcaaacagctggagct
gctggagaagaatctgcttccgcaccatcaactgataaggatgcggatattgaacaaact
aaggatgaggtcagtgttgcaaaggtgacaggttctactagaagtatctcaactgagcaa
actatccagccacgaaagaaagcaattaaaagattggtaagccctgccaaagataaagct
tatatcagcaaagaaaggcaaaagaagaatagcagcaaagcagttagcatctctgccaac
gatgaaagtactttagtaaatggtgaggctaaaattggatag
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