Eucalyptus grandis (rose gum): 104443421
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Entry
104443421 CDS
T03547
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
egr04131
]
104443421
Membrane trafficking [BR:
egr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
104443421
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
104443421
NCBI-ProteinID:
XP_010055098
UniProt:
A0A059C030
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Position
1:51451788..51460494
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AA seq
1127 aa
AA seq
DB search
MYMSYGWPQVIPLERGLRPSSHRIVYFKVNNRLLLVVSPSHLELWSSSQHRVRLGKYKRD
ADSLRREGENSQAVWSPDAKLIAVMTTSLYLHLFKVQFSEKRVQIGGKQPSGLYFATISL
LLSEQVPFADMNLSVSNIISDNRHMLLGLSDGSLYGISWKGEFSGAIGLDHPIRNDSDKV
TDIPHPLNNGIAAIANPGAPISQQNFIKRPAIVQLELCFPMRLLFVLYSDGQLMLCSVSK
KGLKQVESIRSEKLVGSGDAVCTSVASEQQILAVGTRRAVVELYDLADSASLIRTVSLFD
WGYSVEDTGPVTCIAWTPDNSAFAVGWKYRGLTVWSVSGCRLMSTIRQIGLSSVSSPMVK
PNQDSRCEPLVSGVSLMQWDEFGYKLYAIEEGSSERVLAFSFGKCCLNRGVSGMTYVRQV
IYGEDRLLVVQSEDTNELKMLHLNLPVSYLSQNWPVQHVAASKDGMYLAVAGLHGLILYD
IRLKKWRVFGDISQEQKIQCKGLLWLGKIVVVCNYDDSSNTYELLFYPRYHLDQSSLLCR
KSLLTKPMVMDVYENYILVTYRPFDVHIFHVKLSGELTPSSTPDLQLSTVRELSIMTAKS
HPAAMRFIPDQLPRECASTDHLSSSPDGLVREPSRCLILRANGELSLLDLDDGRERELTD
SVELFWVTCGQSEETTNLIEEVSWLDYGHRGMQVWYPSPGVESFKQEDFLQLDPELEFDR
EVYPLGLLPNVGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRNKSQEALR
LAELSAEKPHFSHCLEWLLFTVFDAEISRQNLNKHRNNGLKSATSFTLLEKTCDLIRNFP
EYFDVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVS
QYSALRLLQATLDESLYELAGELVRFLLRSGREYEQASSDSDRLSPRFLGYFLFRSNYKR
QSTDYRSPSFKEQSAHVTSVKNILENHASYLMSGKELSKLVAFVKGTQFDLVEYLQREKN
GSARLESFASGLELIGQKLQMSTLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRSEVLF
DLFRHDLRLWRAYSVTLQSYPAFFEYHDLVEALEEKLAAYANSEEEY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtacatgtcgtacggatggccgcaggtgatcccgctggagcgaggcctgcgcccctct
tctcaccggatcgtctacttcaaggtcaacaaccgcctcctcctcgtcgtctcgccgtct
cacctcgagctctggagctcttctcagcatagagtgagattggggaagtacaagagggat
gcggattcgctgcggagggagggagagaattcgcaggccgtgtggagtcccgatgccaaa
ttgattgccgtcatgacgacttcactctatcttcacttatttaaggttcaattttctgag
aaaagagtacagattggagggaagcagccttctggtttgtattttgcgactatttctctt
ctcctcagcgagcaggttccttttgcagacatgaatttatctgtgagcaatattataagt
gataacaggcatatgctgcttggactctctgacggatccttgtatggcatttcttggaag
ggagagttttctggggctattggacttgatcatcccatacggaatgatagtgataaagtt
actgacataccacatcctttaaataatggaattgctgccatagcgaatccgggagctccg
atatcacaacagaattttataaaaaggcctgcaattgttcagttggagctgtgctttcca
atgaggctgctctttgtgttatattctgatggacaactgatgttatgttcggtgagtaag
aaaggattaaaacaggttgagtctattagatctgaaaagcttgttggatctggtgatgct
gtatgtacatctgtagcttcagagcaacaaatccttgcggttgggaccagaagggcagtt
gtggagctatatgaccttgctgactctgcatcactaattcgtaccgtgtctctgtttgac
tgggggtattctgtggaagacactggtcctgtcacctgtattgcttggaccccagataat
tctgcctttgctgttggatggaagtatagaggactgactgtctggtctgtttcagggtgt
cgattgatgtcgacaatacgtcagattggtttaagttctgtgtcttctcctatggtgaag
ccgaatcaggatagtcggtgtgaaccattggtcagtggtgtctcattgatgcagtgggat
gaattcggatataagctatatgctattgaggagggttcctctgagagagttcttgccttt
tcatttgggaaatgttgcctaaatagaggtgtctctggtatgacatacgtgcgccaggtg
atttacggcgaggatcgcttgcttgttgtgcagtctgaagacacgaatgaacttaaaatg
ctgcatcttaatcttccagtttcatatctctcccaaaattggcctgttcaacatgtggca
gctagcaaggatggaatgtacttagcagttgctggccttcatgggttaattctatatgat
atacgactgaagaagtggcgggtgtttggtgacatttctcaggaacaaaagatacaatgc
aaaggtttgctatggctgggaaagattgttgttgtgtgcaactatgacgattcttctaac
acgtatgagttgcttttttacccaagatatcacctcgatcagagttctttactttgtcgg
aagtcactgcttaccaaaccaatggttatggatgtatatgagaattatatactagtcact
tatcgtccatttgacgttcacatcttccatgtaaaattatctggagaattgacgccatct
agtaccccagatttgcagctttctacagtacgagaactctccatcatgactgcaaagagc
catcctgcagcaatgcgtttcatccctgaccagcttcccagagaatgtgcatcgaccgat
catctctcttcgtctccagatggtttggttagggaaccttccagatgtttgatattgaga
gcaaatggagagctttcattacttgatttggatgatggacgtgaaagggagcttactgac
tctgttgagttattttgggtgacctgtggtcaatccgaggagacaactaatttgatagaa
gaagtatcctggttggattacggtcatcgaggaatgcaggtctggtatccatctccaggt
gtagaatcttttaagcaggaagatttcttgcagttggatccagagctcgaatttgatcga
gaggtttacccacttgggctcctaccaaatgtgggcgttgtggttggtgtttctcagcgg
atgtctttttcagcttgtacggaattcccatgttttgaaccatctcctcaagcgcagact
atattgcattgtctacttcgccacctccttcagaggaacaaaagtcaggaagctttgagg
cttgcagaattatcagcagagaagcctcatttttctcactgtctggagtggcttcttttt
accgtctttgatgcagaaatttccaggcaaaacttgaacaagcaccggaataatggcctt
aaaagtgctaccagtttcactcttctggagaagacctgtgatttgatcagaaactttcct
gagtattttgatgtggtcgtcagtgttgctagaaaaactgatggtcgtcattgggctgat
ctgttttctgctgctggaagatcaacagagttgtttgaggaatgtttccaaagaagatgg
tacaggacagcagcttgctacatactggttatagcaaagctcgaaggtcctgctgtcagt
cagtatagtgccttgcgtttattgcaggcaacacttgatgaatctttgtatgaacttgcg
ggagagctggtgaggttcttgctgagatctggaagggagtacgaacaggcatcttctgat
tcagacagattatcacctcgattcttagggtattttttatttcgttctaattacaagagg
cagtccacagactacagaagcccttcgttcaaggagcaaagcgctcatgtcacttcagtc
aagaatattctagaaaaccatgctagttatttgatgtcggggaaggaactttcgaaactt
gttgcctttgtgaaaggcacacagtttgatttggtggagtatctccaacgagagaaaaat
ggctctgctcgcttggagagttttgcctcagggcttgaactaattggtcaaaagcttcag
atgagtacactgcaaagcaggttggatgcagagtttctgttggctcatatgtgctccgtc
aagttcaaggagtggatagttgttcttgctactctcttaaggcggtctgaggttctgttt
gatctttttcggcatgacttgcgcttgtggagggcttacagcgtcactctacagtcatac
cctgcattctttgagtaccatgatcttgtggaggccttggaagagaaactcgcagcatat
gccaattctgaagaggaatactga
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