Eucalyptus grandis (rose gum): 104443591
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Entry
104443591 CDS
T03547
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03013
Nucleocytoplasmic transport
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104443591
03015 mRNA surveillance pathway
104443591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104443591
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104443591
5.6.2.5 RNA 5'-3' helicase
104443591
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104443591
mRNA cycle factors
Common to processing body (P body) and stress granule
104443591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
104443591
NCBI-ProteinID:
XP_010055383
UniProt:
A0A059C0V2
LinkDB
All DBs
Position
5:3993537..4005540
Genome browser
AA seq
1269 aa
AA seq
DB search
MDSQQNSLFETASQPDAGNDAYTFYEFNTQGDGDFDYPEFRDPMRSAWPTPSDSIAADPT
AGGPSSADQQSDNSPVSAAPGGATKSRRGGGGGSGSSSGGGGNQTVDALAAGMSGLNFED
TVDDDSYEYGKGDFMEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVR
AKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDM
NWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEK
PGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRI
AYFIFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPV
DVNHGLSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQMVRNTLPRRF
GAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS
NVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK
DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQA
TEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQ
YRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASG
TSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMARNGALRQQLYKEI
EVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK
QPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIMPHDGFGP
IASSSPNADRRSSRARGSYVPPGPPNGTHKTGVHPAGFPMPRAPIHPFPGAPPSQPYAIP
TRGAVHGPVGGVPHGPPPGSRGFGAGRGGAAPIGSHLPHQQGTQQTIGGSNFNFPPLENA
NSQPSAGGQLSQPGFVNNLQTQGSGQAFRDGFSMGGMSQDFLGDDFKSQGSHVPYNMADF
STQASQSGYAVDYMTQGGQGGFPGNFLNQNTQNMYSRFGSGNDFMSQDYMTHGSQALFTQ
VGFSEPSQDDPSQSHFGMSSQLQTQGLMNSLYSQPFTQYGMQPLNLQSSQQPQSQQGQGS
QNQKIHYAG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggattcccagcagaacagcctcttcgagacggcgtcgcagcccgacgccggcaatgac
gcctacaccttctacgaattcaacacccagggcgacggcgatttcgattaccccgagttc
cgcgacccgatgcggtccgcgtggcccaccccgtccgactccatcgccgccgaccccacc
gccggcggcccctcctccgccgatcagcagtccgacaattcccccgtatccgccgcgccc
ggcggcgccacgaagagccgccgcggcgggggcggaggctcggggagcagcagcggaggg
ggcgggaatcagacggtggatgccctagccgccgggatgagcgggttgaatttcgaggat
acggtcgatgacgatagttatgagtacgggaagggcgatttcatggagcacgcgtgtcgg
tactgcggggtttcgaaccctgcgtgtgtggtaaggtgtaacgtaccgtcgtgccggaaa
tggttctgcaattcgaggggaaacacatccgggtcacatattgtcaatcacctggtcaga
gcaaagcacaaagaagtttgccttcataaggacagtcctttgggggaaaccattcttgaa
tgctataattgtggatgccgtaatgttttccttcttggattcatttctgccaaaactgaa
agtgttgttgttctactgtgtcgggagccctgcttgagcgtcaatgctttgaaggacatg
aactgggacctgagtcagtggtgtcctttgattgatgacagatgcttcttgcagtggctt
gttaaggtcccatcagaacaggagcagttgagggcacgccagatcagcgcacaacaaata
aacaagatagaagaactgtggaagacgaatcctgatgcttcccttgaggatcttgagaag
cctggtgtggatgatgagcctcagcctgtggcactgaagtatgaagatgcatatcagtat
caaaatgtttttgctccactcatcaagcttgaagctgattatgataaaatgatgaaagaa
tctcagagcaaggacaatgtcactattcgatgggatattggtctgaacaagaagcgcatt
gcatattttattttccctaaggaagacaatgagttgagactagtaccaggtgatgagttg
aggctccgctattcaggagatgctgctcatccagcgtggcaatctgtggggcatgtgatt
aagctaactgcacaagaagaggttgctttggagcttcgtgccagtcagggcgttccagtt
gatgtcaatcacggtttgagtgttgactttgtgtggaagagtacaagctttgacagaatg
cagggagcaatgaagacatttgctgtggatgaaacaagtgtcagtgggtatatctatcac
cacttgttgggccatgaggttgagcttcaaatggtccggaatacgttgcctcgtcgattt
ggtgcacctggacttcctgagctcaatgcatctcaggtttttgctgtgaagagcgttctc
cagaagcccataagtttgattcagggtcctcctggcacaggcaaaactgttacttcagcg
gcgatagtttatcacatggctaaacaaggacaggggcaagttctggtctgtgctccaagt
aatgttgctgtggaccagcttgctgaaaagataagtgcaactggattgaaggttgttagg
ctttgtgcaaaatccagggaagctgtcagttcccctgttgagcatttgaccctccattat
caggttcgacatcttgacacttctgaaaagagcgagcttcacaaattacaacagttgaag
gatgagcaaggggaactgtcaagtagtgatgaaaagaagtacaaagctctaaaacgtgcc
accgagcgagagatttctcagagtgctgatgtcatttgttgcacgtgtgtcggtgctgga
gatcctcgattagcaaattttcgctttcggcaggttctaatagatgagtcaactcaggct
acagaacctgaatgtctgatccccctggttctcggtgccaaacaggtagtgctagttggt
gatcactgtcagcttggtcctgtcattatgtgcaagaaagctgctcgagctggactggct
caatcgttatttgaacgtcttgttcttcttggggtaaaaccaatcaggctgcaggttcaa
tatcgtatgcatccatctctgtctgaattcccatcaaatagcttctatgaaggtacactg
caaaatggagttacaatcaatgaacggcagtctacaggcattgattttccttggcctgtg
ccaaaccgccccatgtttttctatgtccagatgggacaagaggagataagtgccagtgga
acatcttatcttaataggactgaagctgcaaatgttgagaaaattgtaacaactttctta
agaagcggagtagtccccagccagattggagtgataacaccatatgaaggacaaagggcc
tatattgtcaactatatggcaagaaatggtgctttgagacagcaactctacaaggaaatt
gaggttgctagtgtagattcatttcaaggaagggaaaaggattacatcattttgtcttgt
gtacgcagtaatgaacaccagggaattggatttctgaatgatcctcgcaggctcaatgtt
gctttaacacgtgctcgatatggaattgttatccttggaaaccctaaagttctaagcaaa
cagcctctgtggaatagtttattgactcactacaaggaacatgaatgcttggttgaagga
cctttgaataacttgaaacagagcatggttcagtttcaaaaaccgaaaaagatctacaat
gatcggagactgttctttggtggaggacctgggattatgccacatgatggttttggtccc
attgcatcctctagtccaaatgctgataggagaagcagccgtgcccgaggttcttatgtg
ccacctggcccaccaaatggcactcacaagacaggagtgcatccagctggatttccaatg
cctagagcccccatccatccatttcctggtgctcccccttctcagccatatgctatacca
actcgaggagctgttcatggacctgttggaggcgttcctcatggccctccacctggaagt
cgtggttttggggctggacgtggcggtgctgctcctattggcagtcatctaccgcaccag
caagggacacagcaaactattggtggttctaatttcaactttcctcctctggagaatgca
aatagccagccatctgcgggtggccaactgtctcaacctggatttgtcaataacctacaa
acacagggatctggccaagctttccgtgatggtttctccatggggggcatgtcacaagat
ttcttgggtgatgacttcaagagccagggatcacatgttccctacaatatggctgatttt
tctacacaggcttctcaaagtgggtatgctgttgattatatgacacaaggtggacaaggt
ggcttccctgggaatttcctaaatcagaatactcaaaatatgtattctcgttttggcagt
ggaaatgattttatgtctcaggattacatgactcatggatcacaagctctatttactcaa
gtgggttttagtgaaccctcacaagatgatccatcgcaaagccacttcgggatgagcagc
caactgcagactcagggcttgatgaattctctttattctcagccttttacacaatatggc
atgcaacctctgaacctgcaatcttctcaacagccgcaatctcagcaaggtcagggctca
cagaatcagaagattcactatgctggttaa
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