Eucalyptus grandis (rose gum): 104443601
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Entry
104443601 CDS
T03547
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104443601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egr03400
]
104443601
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104443601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DUF1877
Motif
Other DBs
NCBI-GeneID:
104443601
NCBI-ProteinID:
XP_039169991
LinkDB
All DBs
Position
5:4112247..4117933
Genome browser
AA seq
1277 aa
AA seq
DB search
MSYTVPVAKRTRAQTRSGGRRDRPRRRREGAVVAGGVDGDVEFLGVASPASQKGRNSSKG
LAEAEDVISIDSGDSGDLGGGGDGALRVVAGTGVCDSAASSSCGVKLGRPRAGSACGDRD
EEAVSSDEPVEDRAVLGSDSTMCGNQEGPLENSGAAVVGGDGSIGESGGSKCDGGKNENL
TSSPGGGMVDTGASKVDEEQNHIEIIEVSDEMETSSSEDEMSSSEDDITDYEDEDYVGKE
SMSSVSMDNSSSSSEEEVGDSKDSSQCEFTEEESAFNGPQEGKPTPDLKNRKASPHNIIE
EESASDRPQEGTPVPDLKKRKAFGLKIPSGSLSDEDGNKESAVNFGEERNCVAQRTRSHF
GRQWRDTMKVGTFSHPLDVDDDDDDDEDLGLSQKCHVRDEILVNQDSHCVRDKTEFAAVS
NYIKARSKSCIDQSKDDKDDDISHSEKHNPENFSSKSIKRQAVSNMDDGAECPLKECGNG
EDFPFLSKRKRVRSPQDYDVIKILVDSIWDKGEITPKEADAFRDTTCEGETNRQSNEWIL
PLKFTFGEEEPKQVEKSDYEKELDKLWDELDFCLRASEIDSYNADLVESKDVDPQPDFDR
VTLCSQGNHEFILDEETGVRCKHCLFLQLEIKYVVPPFSNDPLERSGQRVFGRYDYEDYL
LEKIRSQDSSCNLQAGLPSANVHGTVWDLIPDVRSDLYPHQREGFEFIWRNIAGGIQLDE
LRRQKTVGCDGGCIISHAPGTGKSRLTIVFLRTYMELFPSCRPVIIAPRSMLLTWEEEFQ
KWKEDIPFHNLNNPELSGKESKAALSVLKHGDQSTKHVRMVKLYSWTKESSILGISYTLF
KSLTGQNRKVGSPRHTTEDEQRKILLEFPGLLVLDEGHTPRNDQSLIWKALCKVETQRRI
ILSGTPFQNNFDELFNTLCLVRPKFAERISLECYGNFSVKHGRKRSKVREEWDVMARSIL
KKDKDALEKLKAMINPFVHVHKGIILQERLPGLQDSVIVLRPGKLQKSLLENVQSMKNPF
LLSHLVSLISVHPSLFSQCSVSESEGLTVDISELESLRKKPEAGVKTRFLMELIRLCEAT
HEKVLVFSQFIVPLSFIRDLLKSNFHWTDGKELLYMDGQADIKQRQSSINAFNDPTSEVR
VLLASIKACSEGISLVGASRVVLVDVVWNPSVERQAISRAYRLGQKNVVYIYHLITSGTM
EAEKYCRQVEKDRLSKLVFASSDGTGNPGQKVTSTGSDDKVLEELIHHSTLSDMFEKIIN
QPKESNLIEAFFNLVDT
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagttacaccgtgccggtcgcgaagcggactcgggcgcagacccgttcgggcggccgt
cgcgatcgtcctcgtcgtcggagggagggagcagtcgtcgcgggaggtgtcgacggggac
gtggaattcttgggggtagcgtctccggcgtcgcagaaggggcggaattcgagcaagggt
ttggcggaagcggaggacgtgatatcgattgactcgggcgattctggtgatttgggcggc
ggtggcgatggggcgctgcgcgtggtcgcggggaccggggtttgtgattctgcggcgtcg
agttcttgcggcgtgaaattagggaggccgcgtgccggttctgcctgcggcgatcgtgat
gaagaggctgtttctagtgatgagccggtcgaggatcgcgctgtgttgggttcggattcg
acaatgtgcgggaatcaagagggtcctcttgagaatagtggggctgctgtggtgggggga
gatggaagcattggtgaaagtggtggctccaaatgtgatggtggaaagaacgaaaatttg
acgtcctctcctggtggaggaatggtagataccggtgcctcaaaggtcgatgaggaacag
aaccatattgaaattattgaggtgtcggatgagatggagacgtcttctagtgaggatgag
atgtcgtcgagtgaggatgacatcacagattatgaggatgaggattacgtgggcaaggaa
tcaatgagttctgttagcatggataactcgagttcttctagtgaggaggaagtaggagat
agtaaagattcgagccaatgtgagtttacagaagaagaaagtgctttcaatggacctcaa
gaagggaaacccacgcccgatttgaaaaacaggaaagcaagcccacataacattatagaa
gaagaaagtgcttctgaccgacctcaagaagggacacccgtgccggatttgaagaagagg
aaagcatttggtttgaaaatcccgagtggttctcttagtgatgaagatggcaacaaagag
agtgctgttaattttggtgaagagcgcaattgtgtggcacaacgaactcgatcacatttt
gggaggcaatggagggatacaatgaaggttggcacgttcagccatccacttgatgttgac
gatgatgatgatgatgatgaggatcttggcttatctcaaaagtgccatgtcagagatgaa
attctcgttaatcaggacagtcactgtgtaagagacaaaactgaatttgctgccgtgtca
aactatataaaagctagatcgaagtcatgtatagatcaatctaaggacgataaagatgac
gacatctctcatagtgaaaagcacaacccagaaaatttttcatccaaatccattaagaga
caagctgtttcaaacatggatgatggtgcagaatgtccgctgaaggaatgtgggaatggt
gaagattttccattcctatccaagagaaagcgcgttcgttctccccaagattacgatgtc
atcaaaattctggtggattctatatgggataagggggagattacccccaaagaagcagat
gcttttagagacacaacttgtgaaggagaaacaaataggcaaagcaatgaatggattctt
ccattgaaatttacatttggagaagaggaaccaaagcaggtggagaaatcagattacgag
aaagaactggacaagctgtgggatgaacttgacttttgtctccgggctagtgagattgac
tcttataatgccgatctggttgaaagcaaagatgttgaccctcagcctgactttgataga
gtgaccctttgtagtcaggggaatcatgagtttattctcgatgaagaaaccggagtcaga
tgcaaacattgcttgtttctgcagctggagatcaaatatgttgtaccaccatttagtaat
gatcccttggaaaggtcagggcaaagagtctttggtagatatgattacgaggactatttg
cttgaaaagattcgctctcaagactccagttgcaatctccaagctggccttccctcggcc
aatgtgcatggcacggtttgggacttaattcctgatgtaaggagtgacttgtatccacat
caacgtgaagggttcgagttcatttggagaaatatagcaggaggcattcagcttgatgag
ctgagaaggcaaaaaacagttggctgtgatggcggatgtatcatatcacatgctcctgga
actggaaaatctcggctgactattgtttttcttcgaacgtatatggaactgtttccaagt
tgccggcccgtgatcattgctcctcggagcatgctcctcacatgggaagaagagtttcaa
aagtggaaggaggatataccatttcataatctcaacaatccggagctttctgggaaggaa
agtaaggcagctttgagtgttcttaaacatggagaccagagcaccaaacatgttcgtatg
gtgaagctatattcatggacaaaagaaagcagcatcctgggaataagttacacactcttc
aagtcccttacggggcaaaataggaaagttggttcacctcgacatacaactgaagatgag
cagaggaaaatacttctagagtttcctggtcttttagtccttgatgaaggacatactcct
cgcaatgatcagagcctgatctggaaggctttgtgtaaagtggaaacacaaagacgcatc
attctgtccggaactcctttccagaataattttgacgagctctttaatactctctgcttg
gtgaggccaaaatttgctgaaagaatttcactggagtgctatggtaatttttctgtaaag
catggacgcaaaagaagcaaggtgagagaggaatgggatgtgatggcccgatctatacta
aaaaaggacaaggatgcactagagaagctcaaagctatgattaatccattcgtgcatgta
cacaaaggtatcatacttcaagaaagacttcctgggttgcaggactctgtgattgttctt
cggccaggaaaattacagaagagcctccttgagaatgtgcaaagcatgaagaatccgttt
cttttgagtcaccttgtctccttgatatccgttcatccatctctcttctctcagtgctct
gtatctgagagtgaagggttaacagttgacataagtgagttagaaagccttagaaagaaa
ccagaagccggggtcaaaaccagatttcttatggaactcatccgtctttgtgaggctacg
catgaaaaggtcctggtttttagccaattcattgttcccttgagctttataagggacctg
ctcaagtccaattttcattggacagatggcaaggaactgttgtacatggatggacaggct
gacatcaagcagcgccaatcctccattaatgccttcaatgacccaacgagtgaagtgagg
gtgttgcttgcctctataaaagcatgttccgaagggattagtctggtgggtgcttcaagg
gtcgtgttagtagatgttgtatggaatccgtcagttgagaggcaggccataagccgtgcc
tacagacttggacagaagaatgtagtctatatttatcatctgatcacttctgggacaatg
gaggctgagaaatactgtcgacaggtggagaaggacaggttgtccaagttagtgttcgct
tcatcggatgggactggcaatcctggacaaaaagtcacctcaacgggatcggatgataaa
gtcctggaagagctgatacatcattctaccctcagcgatatgtttgaaaagataattaac
cagcccaaggagtctaacttgatcgaggctttttttaatttggtggacacttag
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