Eucalyptus grandis (rose gum): 104443830
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Entry
104443830 CDS
T03547
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03022
Basal transcription factors
egr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104443830
09124 Replication and repair
03420 Nucleotide excision repair
104443830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104443830
03400 DNA repair and recombination proteins [BR:
egr03400
]
104443830
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104443830
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104443830
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104443830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
104443830
NCBI-ProteinID:
XP_010055676
UniProt:
A0A059C1U8
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Position
5:8296128..8303315
Genome browser
AA seq
796 aa
AA seq
DB search
MQLLLSGRRKRKRILQFPPQPPPEKSMGHGDKGRPGKRQKSSAKDDYRSAIAAAEEDEAM
YGEEMDDDYRDGDGEGKKKDFSKLELKQDHGNRPLWACADGRIFLETFSSLYKQAYDFLI
AIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTA
NYGKVKLVLKKNRYFIESPFPEVLKKLLRDEVITRARISPEGPGADGFTISKAMGEVGVG
HNELLNEAELAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDL
EVELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT
NAVSVDQWAFQFKLWSTIRDEQICRFTSDNKERFRGNAGVVVTTYNMVAFGGKRSEESEK
IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIG
PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRAC
EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHLERTKILQAFKTSRDVN
TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKPQDRMAGGKEEYNA
FFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLSKV
LSAGDDAVGLEQLEEDADDIALHKARRFVGSMSAMSGANGMVYMEYGIGRRLGPGQPKPK
PKDPSKRHYLFKRRYT
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttctcctttccggacgtcgaaagagaaaacggattctgcaatttccaccgcaa
ccgccaccggaaaaatccatgggacacggtgacaagggacggcccggcaagaggcagaaa
tcgtcggccaaggatgattaccggagcgcgatcgccgcggcggaggaggacgaggcgatg
tacggcgaagagatggacgacgattaccgcgacggcgacggcgaagggaagaagaaggac
tttagcaagttggagctgaagcaggatcacggcaatcggcccctatgggcttgtgcggac
ggccggattttcctggagacgttttcttccttgtacaagcaggcttatgattttctcatt
gccattgctgagcctgtttgcaggccggagtcgatgcacgagtacaatttgaccccgcac
tcattgtatgcggcggtgtcagttggtcttgagacggaaacaatcatttctgtactgaat
aaattgtcaaagaccaagctccctaaagagatgattgacttcatacatgcttcgactgct
aattacggaaaagtgaagctcgtgcttaaaaagaatcgatacttcattgagtcgcccttc
cctgaggtgctgaagaagttgcttagggatgaagttataactcgagctaggatatctcct
gagggacctggtgctgatggattcacaattagcaaagcaatgggtgaggttggggttgga
cataatgagttactgaatgaagcagaactggctgctgcagctgaggagaaagaaactcat
tcatttgagattgatccttctcaggttgaaaatgtgaagcaacgctgcttgcccaatgct
ttgaactatcccatgttggaggagtatgactttagaaatgatacggtaaaccctgacctg
gaagtagagctgaagcctcatgcacaaccacggccatatcaagaaaaaagtctgagtaaa
atgtttggaaatggtcgagctagatctggtatcattgtgctaccttgtggtgccgggaaa
tctttggttggtgtttctgcagcatgccggataaagaagagttgtctttgcttggcaaca
aatgcagtttctgtggatcaatgggcatttcagttcaagttgtggtcaactataagagat
gaacaaatttgccggttcacatctgacaacaaagaaagatttcgtggcaatgctggggtt
gttgttactacatacaacatggttgcttttggtggaaaacgatctgaagaatctgaaaaa
attattgaagaaataaggaatagagaatgggggttacttctgatggatgaggtgcacgtg
gttcccgctcacatgttccgaaaggtcatcagcctcacaaaatctcactgcaaacttgga
ctcactgccacacttgttcgtgaggatgagaggataacagatctgaatttccttatcggt
cccaaattgtatgaagcaaattggttagatttagtgaaaggaggctttattgcaaatgtg
cagtgtgcagaagtatggtgtccgatgacaaaggagttcttcgctgagtatctgaagaag
gagaactccaagaaaaagcaggcactgtatgtaatgaacccgaataagttcagagcttgc
gaatttctgattcgttttcatgaacaacagcgtggggacaaaataattgtctttgccgat
aatctttttgccctaacagagtatgcaatgaaacttcgcaaaccaatgatttatggtgct
accagccatcttgaacggacaaaaattctccaagcttttaaaactagtcgggatgtgaac
acaatttttctatcaaaggttggtgataattcaatagatattcctgaggcaaatgttata
attcaaatttcgtcacatgctggatctagacgacaagaagctcaacgtcttggacgtatt
cttagggcaaagggcaagcctcaagataggatggcaggaggcaaggaagaatataatgca
tttttctattcacttgtgtctacagatacacaggaaatgtactactccaccaaacggcag
cagtttttgatcgatcaaggttacagctttaaggtgatcacaagcttgccacctcctgat
tcaggagctgatttgagctatcaccgactggatgagcaattggcacttctaagcaaggta
ttgagtgctggcgatgatgcagttggtctagagcaattggaagaagatgctgatgatata
gctcttcataaagctcgtcgttttgttggatcaatgagtgcaatgtcaggcgcaaatggg
atggtgtacatggaatacggtattggacgaaggcttggaccaggccaaccaaaacctaaa
cctaaggatccttccaagcgacattatttgtttaagagaagatatacctga
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