Eucalyptus grandis (rose gum): 104444203
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Entry
104444203 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03013
Nucleocytoplasmic transport
egr03015
mRNA surveillance pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104444203
09122 Translation
03013 Nucleocytoplasmic transport
104444203
03015 mRNA surveillance pathway
104444203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104444203
03041 Spliceosome [BR:
egr03041
]
104444203
03009 Ribosome biogenesis [BR:
egr03009
]
104444203
03012 Translation factors [BR:
egr03012
]
104444203
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104444203
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104444203
mRNA cycle factors
Stress granule specific factors
104444203
Spliceosome [BR:
egr03041
]
Complex C
Other components
EJC/TREX
104444203
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
90S particles
Helicases
104444203
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
eIF-4
104444203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
AAA_19
SH3_12
Helicase_RecD
TniB
DUF7368
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
104444203
NCBI-ProteinID:
XP_039168138
LinkDB
All DBs
Position
5:11736071..11740039
Genome browser
AA seq
419 aa
AA seq
DB search
MATSLMARPVLATRSRPPAAAAAAAAAAAAAAAAAFETAPGVEAVSSFDSMGLSDDVLRG
IYGHGFDKPSAIQQRAVVPIVRGRDVIAQAQSGTGKTSTFALASCQIVDTSRRDVQVLIL
SPTRDLASQTERVVLAIGYYRNVLAHACVGGKSMGEDIRKLEHGVHVVXGTPGRVLDMIK
RRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRFLPPELQVVLVSATFPTEILEMTGRF
MADPIRIVVKRDELMLERVDQYMVPVEREDWKFDTLCDLYDNCPISQGVVFCNTKRKVEW
LAEKMRDSNFTVSFMHGDMPQKXRDAVMAGFRSGTTRLMITTDVWARGIDVEQVCLVVNY
DLPNSRELYVHRAGRVGRFGRKGVVVNFVKDKEIQILRDIEQYYGTNISECPEDPADII
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccttgatggcaaggccagttctggcgacccgatcgcgcccgccggcggcg
gcggcggcggcggcggcggcggcggcggcggcggcggcggcggcattcgagacggcgcca
ggcgtggaggccgtgtcgagcttcgacagcatgggcctgagcgacgatgtcctccgtggg
atctacggccacgggttcgacaagccctcggcgattcaacagcgagccgtggtccccatt
gtccgaggccgagacgtgatcgctcaggcgcaatccggcacgggcaagacctccaccttt
gccctcgcgtcttgccagatcgtggacacctccagaagagacgtgcaagtgctgattttg
tcacctacgagggatttggcgagtcagacggagagagttgtgctggctattggttattac
aggaacgtgctagcccatgcatgcgttggaggcaagagcatgggtgaagatatccggaaa
ttggagcacggagttcatgttgtgntcggaactccgggcagggtgctcgacatgataaag
aggagaactcttcgcaccagagccatcaaactcctagtccttgacgaagctgatgagatg
ctgagcagaggatttaaagatcaaatctacgatgtttacagattccttcctccagagctt
caggttgtcttagtttcagcaaccttccccactgagatattagagatgacaggaagattc
atggccgatcccataaggattgttgtgaagcgtgatgagttgatgctggagcgcgtcgac
cagtacatggtgccagtggaaagagaagactggaaatttgacactctgtgcgatctatac
gacaactgccccataagccaaggagttgtattctgcaacactaagcggaaggtggagtgg
cttgcagaaaagatgcgtgattctaacttcactgtgtctttcatgcacggggacatgcct
caaaagnngagagatgcagtaatggctggatttcgatctgggacgactcggttgatgatc
accaccgatgtgtgggctcgagggattgatgttgagcaggtttgtcttgttgtcaactat
gatcttcccaacagcagagagctgtacgtccatcgggccggtcgagtaggccgttttggg
cggaagggtgttgtggtaaattttgtcaaagacaaggagatccagattcttagagacata
gagcagtattatggcaccaacataagcgaatgtccggaggaccctgccgatataatatga
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