KEGG   Eucalyptus grandis (rose gum): 104444206
Entry
104444206         CDS       T03547                                 
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III homolog B
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03013  Nucleocytoplasmic transport
egr03015  mRNA surveillance pathway
egr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104444206
  09122 Translation
   03013 Nucleocytoplasmic transport
    104444206
   03015 mRNA surveillance pathway
    104444206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104444206
   03041 Spliceosome [BR:egr03041]
    104444206
   03009 Ribosome biogenesis [BR:egr03009]
    104444206
   03012 Translation factors [BR:egr03012]
    104444206
Enzymes [BR:egr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104444206
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104444206
   mRNA cycle factors
    Stress granule specific factors
     104444206
Spliceosome [BR:egr03041]
 Complex C
  Other components
   EJC/TREX
    104444206
Ribosome biogenesis [BR:egr03009]
 Eukaryotic type
  90S particles
   Helicases
    104444206
Translation factors [BR:egr03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    104444206
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 104444206
NCBI-ProteinID: XP_039168119
LinkDB
Position
5:12090746..12099955
AA seq 362 aa
MATSLMARPVPATRSRPPAAFETALGVEAMSSFDRMGLSDDVLRGIYSHRFDNPSAIQQR
AMVPIVRGQDVIAQVQSGMGKISTFALASCQIVDTSRKDVQVLILSPTRDLASQTERVVL
AIGSYRNVLAHACVGGKSMGEDIRKLEHGVNVVSGTPGRVLDMIKRRTLCTRAIKLLVLD
EADEMLSRGFKDQIYDVYRFLPPELQVVLVSATFPTEILEMTGRFMTDPIRIVVKRDELM
LEVXVMFVEQVEWLAEKMRDSNFTVSVMHGDMPQKERDAVMAGFQSGATRLMITTDVWAR
GIDVEQVCLVVNYDLPNSRELYVHRAGRVGRFGRKGVVVNFVKDNEIRIRRDIEQYYGTN
IR
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcgacgtccttgatggcaaggccagttccggcgacccgatcgcgcccgccggctgca
ttcgagacggcgctaggcgtggaggccatgtcaagcttcgaccgcatgggcctgagtgac
gatgtcctccgtgggatctacagccacaggttcgacaacccctcggcgattcagcagcga
gccatggtgccgattgtccggggccaagacgtgatcgctcaggtgcaatccggcatgggc
aagatctccacctttgccctcgcgtcttgccaaatcgtggacacctccagaaaagacgtg
caagtgctgattttgtcacctacgagggatttggcgagtcagacggagagagttgtgctg
gctatcggttcttacaggaacgtgctagcccatgcatgtgttggaggcaagagcatgggt
gaagatatccggaaattggagcatggagttaatgttgtgtccggaactccaggcagggtg
ctcgacatgataaagaggagaactctttgcaccagagccatcaaactcctagtccttgac
gaagctgatgagatgctgagcagaggatttaaggatcaaatctatgatgtttacagattc
cttcctccagagcttcaggttgtcttagtttcagcaaccttccccactgagatattagag
atgacaggaagattcatgaccgatcccataaggattgttgtgaagcgtgatgagttgatg
ctggaggtgnnagttatgtttgtcgagcaggtggagtggcttgctgaaaagatgcgtgat
tctaacttcactgtgtctgtcatgcacggggacatgcctcaaaaggagagagatgcagta
atggctggattccaatctggggcgactcggttgatgatcaccactgatgtgtgggctcga
gggattgatgttgagcaggtttgtctcgttgtcaactatgatcttcccaacagcagagag
ctgtatgtccatcgggccggtcgagtaggccgttttgggcggaagggtgttgtggtaaat
tttgtcaaagacaacgagatccggattcgtagagacatagaacagtattatggcaccaac
atacgctaa

DBGET integrated database retrieval system