Eucalyptus grandis (rose gum): 104444347
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Entry
104444347 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104444347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egr03400
]
104444347
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
104444347
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
104444347
NCBI-ProteinID:
XP_010056303
UniProt:
A0A059C3F5
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Position
5:15432724..15440355
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AA seq
687 aa
AA seq
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MARNKEALVLLLDVGPSMHHLLPEVEKICSMIVQKKLVYSKYDEVGVVLFGTEETTNELT
MEVGGYEHVVVLQNIKVVDGDLVETLRQIPRGTVPGDFLDAIVVGMDMLIKKYSSTNKGK
KRLCLMTNGLSPIKDPYEGSKEDQVNAIAEQMTSHGMKLECVVVRESVVRGENVSVMEEN
DRILNLFPQKSCAKTIFVESSTSLLGALKTRNISPVTIFRGDLEISPKLKIKVWVYKKTS
EEKFPTLKKYSDKAPSTDKFASHEVKVDYEYKSVEDANKVVXPEQRIKGYRYGPQVVPIS
ADEWDAVKFKPEKSVKLLGFTDSSNIMRHHYMKDVNIFIADPGDQNAIVAVSALARAMKE
MHKVAILRCVWRQGQGNVVVGVLTPNVSDNDHVPDSFYFNILPFAEDVREFQFPSFSNLP
ASLLPDEEQQEAADNFVKMLDLTPSDRKEMLQPDFTPNPVLERFYNYLELKSKHPDAAVP
PLDKTLKRITEPDPELLAQKKSAIDSLLRHFEVKEKPKLKKSTRRMREKPSGSDDEDNYR
RISSKTEVELIENGGKVEKIGDSTPVQDFEAMMSRRDNPEWVNRAITEMKNKIHDLIEDS
YEGDNYAKALDLLVALRKGCILEQEPKQFNDFLHQLCKFCLQNDLRSFCDFLATKGITLI
SKTEAADSDVTEEEARSFLVKSEPKPE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctcggaacaaggaagcattggtgttgttgcttgatgtaggaccatcgatgcaccat
cttctccctgaggttgaaaaaatctgctcaatgatagtacagaagaagttagtttacagc
aagtatgatgaagttggggttgtcctgtttggaactgaagagactacaaatgagttgaca
atggaagtgggtggctatgaacatgtcgtcgttctacaaaatattaaagttgttgatgga
gatcttgttgaaactttgaggcaaattcctcgagggactgtacctggtgattttcttgat
gcaattgtggttgggatggatatgctgataaagaaatatagttcgacaaacaaggggaag
aaacgactgtgtctaatgactaatggtttatctccaatcaaggatccatacgagggtagt
aaagaagaccaggtcaatgccattgccgagcaaatgacttcacatggcatgaagttggaa
tgcgtagttgtgagggaaagtgtagtccgtggtgaaaatgtatctgtgatggaggaaaat
gatcggatattgaatctgtttccacagaaatcctgcgcaaagaccatcttcgttgagagc
tcgacctctttactaggtgcacttaaaactcgaaatatatcccctgttacaatatttaga
ggggatcttgaaatcagccccaaactcaagataaaggtatgggtttacaagaaaacatcg
gaggagaaatttccaactttgaagaaatattcagataaagcaccttcaactgataaattt
gcctctcatgaagtcaaggtagattatgagtacaaaagtgttgaagatgctaataaagtt
gtcnccccagaacaaaggattaaaggttatcgatatggacctcaagtagttccaatatct
gctgatgaatgggatgctgtgaaattcaagcctgaaaagagtgtgaagcttttgggattt
acagattcttcaaatatcatgaggcaccattacatgaaggatgtaaacattttcatcgct
gatcctggtgaccagaatgccattgttgcagtttctgctttagctagagcaatgaaggaa
atgcataaagtagccattctacgctgtgtgtggaggcaagggcaaggaaatgttgttgtg
ggggttttgacaccaaatgtttctgacaatgatcacgtgcccgattcattttatttcaat
atacttccttttgctgaggatgttcgggaatttcaattcccctctttcagcaatcttcca
gcctcattactgccagatgaagagcaacaggaggctgcagataactttgtgaaaatgctg
gatctcacaccttctgatagaaaggaaatgttgcagcctgattttacaccgaatcctgtt
ttggagcgtttctacaattatcttgagttgaagtctaagcacccagatgcagctgtcccg
ccacttgataaaactctcaagagaataactgaacctgatccagaacttcttgcccaaaaa
aaatctgccatcgattcacttcttagacattttgaagtgaaggaaaagcctaagctgaag
aaatcgacaaggcgaatgcgagagaaaccgtctggatctgacgatgaagacaactacaga
cgcatttccagcaaaaccgaagtcgaactcattgaaaacggtggcaaagttgagaaaatt
ggagattcgacaccagtccaagatttcgaagcgatgatgtcacgcagggacaaccccgaa
tgggtcaatagagctataacggaaatgaaaaacaagatacatgacctgattgaggactct
tatgaaggagataattatgctaaagcactggatttactggttgcccttcgcaagggttgc
atccttgagcaagaaccgaagcagttcaatgatttcttgcaccagctctgcaaattctgc
ctgcaaaacgatctgcggagtttctgcgatttccttgccaccaaagggatcacattgatc
tccaagaccgaagctgcagacagcgacgtcacagaggaagaggctagaagctttttggtg
aaaagtgagccaaagccagaatga
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