Eucalyptus grandis (rose gum): 104444897
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Entry
104444897 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104444897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104444897
03019 Messenger RNA biogenesis [BR:
egr03019
]
104444897
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104444897
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104444897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
104444897
NCBI-ProteinID:
XP_018730127
UniProt:
A0A059C7K7
LinkDB
All DBs
Position
5:complement(30360333..30369727)
Genome browser
AA seq
719 aa
AA seq
DB search
MEDAEGVLSFDFEGGLDAGPPTPPPPSRLPPPRPLLRRRRRRLRRWPRRGGRRRRRPRRP
RWCRGCGLGPAGPGGGGGGGGGNMGGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRM
PICRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEV
LQKIQQLNSYHYGNSNRFFQQRNASAAQHNEKAHSVGNNAVNQNAIVRPSMTEPANLPQQ
QQQQQQQQQQPVQQSQQQLSQTQQQNPSSGTPNQAGRGPTPLPPGVSRYFIVKSCNRENL
ELSVQQGVWATQRSNEAKLNEAFDSAANVILIFSVNRTRHFQGCAKMTSRIGGAASGGNW
KYAHGTAHYGRNFSVKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLAS
LLYLEPDSELMPISLAAESKREEEKAKGLNPDNGAENPDIVPFDDNEEEEEEEEESEEEE
ENYAPLLGPASLARGRGRGMMWPPMQMARGARPIPGMRPFAPGMMGADGFPYGGVAPDGF
GMPDLFGVGPRAFPPYGPRFSGDFSGPASGMMFPGRPMQPGSVFPTGGFGMMMGPGRGPF
MGGMGPAGMNPARAGRSAGMPGALPPPPSQNPNRLVKRDQRPSPGAGSDQGRDQESMGPS
EGADHERSYQPGPRAHQEDNSLRNEESESEDEAPRRSRHGEGKKKRRGGDAVVAMAPSR
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccgaaggtgttctcagcttcgatttcgagggcggcctcgacgccggcccc
ccaacccctccgcctccgtcccgcctcccaccaccccgacccctcctccgccgccgccgc
cgccgcctccgtcggtggccccggcggggggggcggcggcggcggcggccacggcggccc
cggtggtgccgggggtgcggactcgggccggcggggccgggcggcggcggcggcggcggc
ggtgggaacatgggcgggcggcggagcttccggcagacggtgtgccggcactggctccgc
agcctgtgcatgaagggcgacgcctgcgggttccttcaccagtacgacaagtctcgcatg
ccgatctgccggttcttccggctctacggggagtgccgcgagcaggactgcgtgtacaag
cacaccaacgaggatatcaaggagtgtaacatgtacaagttgggtttttgtccaaatggt
cctgactgccgatataggcatgcgaagctacctggacctccacctcctgtggaagaagtc
cttcaaaagattcaacaattgaattcgtaccattatggcaattcaaacagattttttcag
cagcgtaatgcaagcgctgctcaacataatgaaaaagctcattcagtaggaaacaacgct
gtaaatcaaaatgcaattgtaagaccttctatgacggagcctgctaatttgccacagcag
caacagcagcagcagcagcagcagcagcagcctgttcagcagtcccagcaacagctcagc
caaacgcagcaacagaatccttctagcggcacgcctaatcaggcaggcagaggtcccact
cctttgcctccaggagtatctaggtatttcattgttaaaagttgtaaccgtgaaaatctg
gagttatctgtacaacaaggagtatgggcaactcagaggagcaatgaggctaaactgaac
gaggcatttgactctgctgcaaatgtgattttgatattttccgtcaatcgtacacgtcat
tttcagggctgtgcaaagatgacttcgagaattggtggagctgcaagtggggggaactgg
aaatatgcacatggaactgcacattatgggcgaaatttctcagtgaagtggttaaagctg
tgtgaattatcctttcaaaagactcggcatttgaggaacccatacaatgagaacttacca
gtcaagatcagcagagactgtcaggagctagagccctctgttggtgagcagttggcgtcc
ttgctttatttagagcctgatagtgaactcatgccgatttctctggcagcagaatctaaa
cgcgaggaggaaaaggccaaaggattaaatcctgataatggggcagagaatccggatatc
gttccatttgatgacaacgaagaagaagaagaggaagaggaagaaagtgaggaggaggag
gagaactacgctccgcttcttggaccggcatctcttgctagaggaaggggccggggaatg
atgtggccgccgatgcaaatggcacgtggggcccggccaatccccgggatgcggcctttt
gctcctgggatgatgggtgctgatggttttccttacggaggcgttgctcctgatggtttt
ggaatgcccgatctctttggtgtgggtccccgtgctttccctccttatgggccgaggttt
tcaggggacttttcaggtcccgcatcaggcatgatgtttcctggacgacccatgcagcct
ggctcagtttttcctactggtgggtttgggatgatgatgggtcctggacgtggtcccttc
atgggaggaatgggccctgcgggtatgaaccctgcaagagctggccgatctgccggaatg
cctggagcccttccacctcccccttctcaaaacccgaataggttagtgaagagagaccaa
aggccatctcctggtgcaggatcagaccagggtagggatcaagagtcaatggggccaagt
gagggtgctgatcatgagagatcatatcagccaggaccacgagctcatcaggaagataac
agcttaaggaatgaagagagtgaaagcgaggatgaggctccaaggcgctcgaggcacggg
gaggggaagaagaagcgacgtggcggggatgcagtcgtggctatggcccccagtcgctag
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