Eucalyptus grandis (rose gum): 104445353
Help
Entry
104445353 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104445353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104445353
03041 Spliceosome [BR:
egr03041
]
104445353
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104445353
Spliceosome [BR:
egr03041
]
Complex B
Other components
Prp19-related factors
104445353
Complex C
104445353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
104445353
NCBI-ProteinID:
XP_010057541
UniProt:
A0A059C9V3
LinkDB
All DBs
Position
5:complement(49943032..49948729)
Genome browser
AA seq
931 aa
AA seq
DB search
MSIPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARADSPFKKRFVIYERALKALPGSY
KLWHAYLRERLEIVRSLPITHSQYETLDNTFERALVTMHKMPRIWIMYLQTLTVQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGMPIETPLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLASVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDVFEEGMKTVITVRDFSVIFDAYAQFEESML
GIKMENMDLSDEDEEEGEEGENGVQENGFEEDEDIRLDVNLSQSKFEKKILDGFWLHDDK
DVDLRLARLENLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTV
DPMKAVGKPHTLWVAFAKLYESHNDIANARVIFDKAVQVNYKAVDHLASIWCEWAEMELS
HNNFKKALELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLES
TRAVYERILDLRIATPQIIINYAVLLEDNRYFEDAFKVYERGVKIFKYPHVKDIWVTYLS
KFVRRYGKTKLERARELFEHAIETTPSDQVKPLYLQYAKLEEEYGLAKRAMKVYDQATKA
VPGNEKLAMYEIYIARAAEIFGVPKTREIYEQAIENGLPDKDGKAMCLKYAELEKSLGEI
DRARGIYVYASQFADPRSDADFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFIL
PEYVMQKDQKMDLDDARDKLKQAGVSEDEMAALERQLAPSANDIATKEASRKVGFVSAGV
ESQADGGLRSNVNNEDIELPDESDSEEEDKVEIAQKEVPSAVFGGLVRKREDTEKEEEGK
DGESRLGALERIKRLKKLLADVAIDSSMSVS
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatacccaaggagctctacccgtcgcaggacgacctgctctatgaggaggagctc
ctgcgcaaccccttcagcctcaagctgtggtggcgctacctcatcgcccgggccgattcc
cctttcaagaagcgcttcgtcatctacgagcgcgccctcaaggccctccccggcagctac
aagctctggcacgcctacctccgcgagcgcctcgagatcgtccggagcctccccatcacc
cactcccagtacgagaccctggataacacgttcgagcgtgccctggtgacgatgcacaag
atgccccggatttggatcatgtacctccagaccctcacggtgcagaagctggtcacccgc
acccggcggaccttcgaccgggcgctctgcgcgctccccgtcacgcagcacgaccgtatc
tgggagccctacctcgtgttcgtcagccagaggggcatgcccatcgagactccgctcaga
gtttacaggaggtacttgaagtatgacccgacccacattgaggatttcattgagttcttg
attaattcgagtctgtggcaagaggcggcggagaggctggcgtcggtgctgaacgacgat
cagttcttctcgattaagggtaagaccaagcataggttgtggctcgagttgtgcgatttg
ctcacaaaacatgccacagaggtttctggtcttaatgtcgatgcgattataaggggtggg
attaggaagttcactgatgaggtcgggaggttgtggacgtcccttgctgaatactatatc
aggaggaatttacatgagaaggcaagggacgtatttgaggagggcatgaagacggtgatt
accgtgagagatttcagcgtgatattcgatgcttacgcacagttcgaggagagcatgctt
ggtatcaagatggaaaacatggatctgagtgatgaggatgaggaagagggagaggaggga
gagaatggggtacaggaaaatgggtttgaagaggatgaagatatcaggttggatgtgaat
ttgtcacagtctaagtttgagaagaagatccttgatgggttctggttacacgatgataag
gatgtggatttgaggttagctcgactggagaatttgatggagcgcaggccagaattagca
aatagtgttctcttgcgacaaaatccccataacgtggagcaatggcacaggagggtaaag
ctgtttgagggtaatcccacgaagcagattcttacatacacggaagcagtgaggactgta
gatccaatgaaagctgttggaaaacctcatacactttgggtagcctttgctaaattatac
gagagccacaacgatattgctaatgcgagagtgatatttgacaaagcagtgcaggtcaac
tacaaggccgttgatcatttggccagtatttggtgtgagtgggctgagatggagttgagt
cataacaacttcaaaaaggcacttgagttgatgagaagggctactgcggagccgtcagtt
gaggtcaaaagaagagtggctgctgatgggaatgaaccagttcagatgaagctgcacaaa
tcattgaggctgtggacattttatgtagatttggaggagagcctgggtaccttggagtcc
acgcgtgcagtctatgagcgaattttagacttgagaatagccactccccagataattatc
aattatgcagttctgctggaagacaatagatattttgaagatgcatttaaggtatatgaa
agaggtgtcaagatatttaagtatcctcatgtgaaagatatatgggtcacctatctctct
aagtttgtaagaagatatggaaagacgaaactggagcgggcaagagagttgtttgagcat
gctattgaaacgaccccttctgatcaagtaaagcctttgtaccttcaatatgcgaaattg
gaagaggagtatggtcttgcaaagagggcgatgaaggtgtatgatcaagctactaaggct
gtgccaggcaatgagaagttggcaatgtacgaaatttacatagcacgagcagctgagata
tttggtgtcccaaaaacaagagagatctacgagcaagcgatagaaaatggtcttcctgac
aaagatgggaaggctatgtgcttgaaatatgccgagctcgagaaaagcctgggtgaaata
gatcgtgctcgtggaatttacgtgtatgcatcccaattcgctgacccaagatctgatgct
gatttttggaacaagtggcatgaattcgaggtgcagcatgggaatgaagacaccttccga
gaaatgcttcgaattaagcgcagtgtttctgcaagctatagccagacacacttcattctg
cctgagtatgtaatgcaaaaagaccagaagatggatcttgatgatgcaagagacaaattg
aagcaggccggtgtatcggaggatgagatggctgctctcgagaggcagcttgcgccttca
gccaatgacatcgcgacgaaagaagcgagccgaaaagttggttttgtgagtgctggagtg
gaatctcaggcagatggaggtctaagaagtaatgtgaacaacgaggacattgaactgcca
gacgaaagtgactcggaagaagaggataaagttgaaatcgcgcaaaaggaagttccgtcg
gcagttttcggagggttggttcggaagagggaagacactgaaaaggaagaggaaggcaag
gatggcgagagccgtctcggcgccctagagagaattaaaagacttaaaaagcttctggct
gatgtagcgattgactcgagcatgtcggtatcttag
DBGET
integrated database retrieval system
