KEGG   Eucalyptus grandis (rose gum): 104448228
Entry
104448228         CDS       T03547                                 
Name
(RefSeq) sm-like protein LSM8 isoform X2
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03018  RNA degradation
egr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104448228
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104448228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104448228
   03041 Spliceosome [BR:egr03041]
    104448228
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104448228
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104448228
Spliceosome [BR:egr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104448228
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 104448228
NCBI-ProteinID: XP_010060337
LinkDB
Position
6:9587383..9590254
AA seq 98 aa
MSTGPGLDSLVDQTISVITNDGRNIVGVLKGYDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctactggccctggacttgattctctcgtagaccaaacaatatcggtcattacaaat
gatgggcgtaacattgtgggggtcttaaagggctatgaccaagcaacaaatatcattctt
gatgaatctcatgaacgtgtttactccacaaaggaaggcgtgcagcaacttgtgctcggt
ctttacataataaggggtgataacataagcgttgttggagaactagatgaggagcttgat
tccaatctggatttgtccaagctgagagctcatccccttaagcctgtaattcattaa

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