Eucalyptus grandis (rose gum): 104449080
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Entry
104449080 CDS
T03547
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03013
Nucleocytoplasmic transport
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104449080
09122 Translation
03013 Nucleocytoplasmic transport
104449080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104449080
03041 Spliceosome [BR:
egr03041
]
104449080
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104449080
Spliceosome [BR:
egr03041
]
Complex C
Other components
EJC/TREX
104449080
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104449080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EML_2
ANAPC4_WD40
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_WDR75_1st
eIF2A
NBCH_WD40
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_IFT80_2nd
TRM82_WD
WDR90_beta-prop_4th
B-prop_COPA_B_2nd
PAC11
Beta-prop_WDR41
Beta-prop_Nup120_160
Beta-prop_ACSF4
DUF7099
TP_0598_N
WD_LRWD1
CNH
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
104449080
NCBI-ProteinID:
XP_010061402
LinkDB
All DBs
Position
6:25813806..25818236
Genome browser
AA seq
313 aa
AA seq
DB search
MEEAIPFKNLPSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGEMFFLTTGNGTVEVLAYPSL
RPVDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF
NHTGDYVASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFESA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggcgatccccttcaagaatctcccaagcagagaataccaaggtcacaagaag
aaggtgcattcggtggcctggaactgcacggggacgaagctcgcgtccggctccgtcgat
cagaccgctcgcgtctggcacatcgagcctcacggccatggtaaggttaaagatattgaa
ttgaaagggcacacggacagtgtggatcaattatgttgggatccgaagcatgcagattta
attgcaacagcatcaggcgacaagactgtacggctgtgggatgcacgaagtggaaaatgc
tcgcagcaagcagaactcagtggggaaaacatcaacataacctacaaacctgatggaaca
catgtggcagttggtaatagggatgatgagctaacgattttggatgttcggaagtttaag
ccaattcacaagcggaagttcaattatgaggtaaatgaaatagcatggaacatgtcagga
gagatgttctttttgacaacaggaaatggtactgttgaagtactagcatacccatctctt
cgacctgttgatacccttatggctcacactgctggttgctattgtattgcaattgaccca
gttggaaggtattttgctgttggaagtgcagattccttagtgagcctgtgggatatctct
gagatgctctgtgtgaggacttttacgaaacttgaatggcccgtaaggacaataagcttc
aatcatactggagattacgttgcttctgccagtgaagatctgttcattgacatttcaaat
gttcaaactggacggacagtgcaccaaattccatgccgagctgcgatgaacagtgtggaa
tggaatcctaaatacaatttactcgcatatgctggggatgacaaaaacaagtaccaggca
gatgaaggtgttttccggatatttggatttgagagtgcatga
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