Eucalyptus grandis (rose gum): 104449088
Help
Entry
104449088 CDS
T03547
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104449088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104449088
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104449088
mRNA degradation factors
5'-3' decay
Decapping complex
104449088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WDR55
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_TEP1_C
DUF1539
DUF7769
Motif
Other DBs
NCBI-GeneID:
104449088
NCBI-ProteinID:
XP_010061410
LinkDB
All DBs
Position
6:complement(25947303..25958842)
Genome browser
AA seq
1263 aa
AA seq
DB search
MALLSSLPQPQPPLAPSELPAPSSGAGSAPAMPARMPSSKVPRGRHLVGDSVVYDVDVRL
AGEAQPQLEVTPITKYASDPQLVLGRQIAVNQSYICYGLKQGNIRVLNINTASRSLLRGH
TQRITDMVFFAEDVHLLASASTDGRIYVWKVSESVEEDNKQQIIGNIVVAIQLTGLESAH
PRVCWHCHKQEILVVGIGEHVLRIDTTKVGKGELYSAEEPLMCPIDSLIEGVQFVGKHDG
EVTDLSMCQWMTSRLASSSVDGTIKIWEDRKTLPLAVLRPYDGQPVSSAAFVTSPHRPDH
IILITAGPLNRELKVWASASEEGWLLPGDDEKWKCMQTLDLRSSSEPHVQKAFFNQVLVL
PQAGLLLLANAKKNAIYAVHLEYGPNPTSTCMDYLAEFTVTMPILSFTGVSDVSAYGEQV
IQVYCVQTQAIQQYALDLYLCLPPLLEKVGLEKSDPDLSCDVMNVEGPTAADASEIKPTE
FPSAASAPKITGRTSSPDITEAIRFPISSASVEMTAPQAVTSLDEDSRTINVAPSTSQSD
IHVVAAAPPLPLSPRLSLKLSGFRSPSGGSDSGLPFSNHTGNEQVMNSSVDRQVESVPAQ
TSDAALTKDESRNDEKRVVQDNASSLLNHPVVFKHPTHLITPSEILRAISSSETSFLGGK
SEEEANTPDVVVNSEAGNTPEEIKVVADTGFKQEDEFSREERTQDFVAESRERIFTSQIS
DLGMEVARESRDLSESLAEANPVAGSRLMEPPGQSPSGDVEEIHDLSKYVCEKVSEPGMA
ATVLPGPISNGKSKKQKGRNSQVSGPSSSSPSASNSTDSYNEAVTSSSLPSMEAAFPHIV
AMQEKLNQLMNMQKEMKKQMTATVNVPITKEGRRLEASLGRSMEKTVKANNDAFWARFQE
ESFKNEKMVQDRMQQITNLLNNLMNRDMPAILDKIVKKELTTVQQSVVRAIMPAVEKTVS
SAIADSFQKGVGDKAVSQLEKSVNSKLEATVTRQIVAQFQTSGRQAIQDALKSTLEASVI
PAFEMSCKAVFEQVDSTFQKGITEHTTAAQQHLESVHSPLALALRDAVNSASSMTRTLSG
DLAETQRKLLALAVAGANAPVNPLVTELSNGPLGVLQEKVDKPFDLTKELSRLISEHKYE
EAFTLALQRSDLFIVSWLCFQVDLHRILTITPLPLSQGVLLSLLQQLACDINKDTPRKLS
WMTDVASAINPSDPVIAVHVRPIFEQVYQILSHQRTLPTNASPELSSIRLLMHVINSMLM
TSK
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggccctgctgagctccctcccccagccccagccgcctctggccccgtccgagctcccc
gcgccgagctccggcgccggctccgccccggcgatgccggctcggatgccgagcagcaag
gtcccgagggggcggcatttggtgggggattccgtggtgtacgacgtggatgttaggctg
gccggcgaggcgcagccgcagctcgaggtcacgcccatcacgaagtacgcgtccgacccc
cagctcgtgttggggcgccagatcgcggtgaaccagtcgtacatatgctatggtttgaag
caagggaacatcagggtgcttaatattaataccgcgtctcggtctttgctccggggtcac
acgcagaggatcacagacatggttttctttgctgaggatgttcaccttttagccagtgca
agcacagatggaaggatttatgtgtggaaagtctctgaaagcgtagaggaagataataag
caacagattattggaaacattgtcgttgccattcaactaacgggattggagtctgcccat
ccacgcgtttgttggcattgtcacaaacaggaaattctggtggttggaataggagaacat
gttttgagaattgatacgactaaagtggggaagggtgaactttattcagcagaggaacct
ctcatgtgtccgattgatagtcttattgaaggggttcagtttgttggaaaacatgatgga
gaagtgactgatttgtcaatgtgccagtggatgacctcccgtttggcttcctcttccgtt
gatggcacgataaagatttgggaagatcgtaaaacattgccacttgctgttctgagacca
tatgatggccaacctgttagttcagctgcatttgtgacttctccccatcggccagaccat
ataatacttataacagcgggtccattaaatcgtgaactcaaggtttgggcttcagcaagt
gaagaaggttggcttttgccaggtgatgatgaaaaatggaagtgcatgcagacgttggac
ctcaggagttcatctgaaccgcatgttcagaaagcattcttcaatcaagttcttgtattg
cctcaagctggtcttcttttgcttgcaaatgctaagaagaatgctatctatgctgtgcac
ttagaatatggtcccaatccaacaagtacttgcatggactatttggcagagtttactgtc
acaatgcccattctgagttttactggggtaagtgatgtatcagcatatggggaacaggta
attcaggtttactgtgtccagacacaagctattcagcagtatgccttggacttatatttg
tgcctaccaccacttttggagaaggtgggattagagaagtctgatcctgatctgtcttgt
gatgtgatgaatgttgaaggaccaacagctgcagatgcttccgaaataaaacctactgaa
tttccatcagctgcttcagcacctaaaataaccgggagaacaagcagccctgacattaca
gaggctatcaggtttccgataagctctgcttctgttgagatgactgctccacaagcagtt
acatccttggatgaagattctcgaaccattaatgtggcaccttcaactagtcaatctgat
attcatgtcgttgcagctgcccctcctcttcctttaagtcctaggttgtctcttaaactt
tctggttttagaagtccatcgggtggttctgattctggtcttccttttagtaatcacact
ggcaacgaacaagtcatgaattcttctgtagataggcaagtggaaagtgtccctgcacag
acgtcggatgcggctttgacgaaggatgagtcgaggaatgatgaaaagagagttgtacaa
gataatgcatccagtttgcttaaccatcctgttgtgttcaaacatcctactcacttaatt
actccctctgaaatattaagggctatttcatcctctgaaactagttttctcggtggcaag
agtgaggaagaggcaaatactccggatgtggttgttaatagtgaagcaggtaatacacca
gaagaaatcaaagttgtagcagatacaggatttaaacaggaagatgaattttctcgtgag
gaacgaactcaggattttgttgcagagagtagagagagaatttttacttctcaaatttca
gatcttggaatggaggtggccagggaatcccgtgacttatcagaaagcttggcagaagct
aatccagttgccggtagtagattgatggagccacctggccaatccccttctggtgacgtg
gaagaaatccatgacttatcaaaatatgtatgtgaaaaggtttcggagccaggtatggct
gcaacagtcttgccaggcccaatatcaaatgggaaaagtaaaaagcagaaggggagaaat
tcccaagtttcaggtccatcttcatcatcccccagtgcttctaattcaacagattcttac
aatgaagctgtcacaagttcaagtcttccatcaatggaagctgcttttcctcacattgtg
gcaatgcaagagaaacttaatcagctgatgaacatgcaaaaagaaatgaagaagcagatg
actgctactgttaatgtgccaatcactaaagaaggcagaagactggaggcttccctaggg
cgttccatggagaaaactgtcaaggctaataatgacgccttttgggctcggtttcaggaa
gagagtttcaaaaatgagaaaatggtgcaggaccgtatgcagcaaataacaaatttgctt
aataacttgatgaacagggatatgccagccattctggataaaattgtgaaaaaggaattg
actactgttcaacaatctgtagttcgtgccatcatgccagctgttgagaagacagtatct
tcagctattgcggattcatttcagaaaggagttggtgataaagctgttagtcaactggag
aaatcagttaattcaaaacttgaagccacagtcacccgacaaatcgtggcacagttccaa
acttctggcaggcaagctattcaggatgcattaaagtctactttggaagcttcagtgatc
cctgcttttgagatgtcatgtaaagctgtgtttgagcaagtagattctactttccagaaa
ggaatcaccgaacacactactgcagctcagcagcatttagaatctgttcattctccattg
gcacttgctttaagggatgctgttaattcagcgtcgtcaatgacacggaccttgagtgga
gatttggctgaaactcaacggaagcttttagctctcgctgtagctggagctaacgcacca
gtaaacccgttggttacagaattaagcaatgggccattgggtgttctacaggaaaaggtt
gacaagccatttgatctaaccaaagaactgtcacgattgatctctgaacacaaatatgag
gaagctttcaccttggccctgcaaagaagtgatttgttcattgtatcttggttatgtttt
caggttgatctacataggatattgacaatcacccctctcccattaagccagggagttcta
ctgtccctcttgcagcagttggcctgcgacatcaacaaagacacgcctcggaagctgtca
tggatgaccgatgtggccagtgccattaacccatcggacccagtaatcgcggtgcatgtg
cggcccatcttcgagcaagtttaccaaatactgagccatcaacgtactctgccaaccaat
gccagccccgagctatctagtatacgccttctcatgcatgtcattaactccatgctgatg
acgtctaaatga
DBGET
integrated database retrieval system
