Eucalyptus grandis (rose gum): 104449207
Help
Entry
104449207 CDS
T03547
Name
(RefSeq) uncharacterized protein LOC104449207 isoform X1
KO
K06100
symplekin
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104449207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104449207
03019 Messenger RNA biogenesis [BR:
egr03019
]
104449207
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104449207
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104449207
U7-dependent histone pre-mRNA processing factors
104449207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
104449207
NCBI-ProteinID:
XP_010061574
LinkDB
All DBs
Position
6:complement(34100361..34131458)
Genome browser
AA seq
1333 aa
AA seq
DB search
MASSRDQALSLLAAANNHGDLAVKLSSLRQARDILLAIDPALASELLPYLAELQSSPEAL
VRKSLAETIEELGLKMLEHSCVLMPVLLAFLRDVDSMVAKQSIISGTKIFCRVLEEMTVQ
LNIRGKIERWLEDMWLSMLKFRENIVTTAMEPGCISTRLLALKFLERYVLLFTPDNNELG
KPLPEGGQVFNVSRLSGSHSIIDPVLLMSEAGMILDYLLDMLSMASGLPGCLAIAVINCL
ASIGRKRPQHFSTVFAALLAFDSNCETGKRYHAASVRYSLRTAFLGFLRCTSPAILESRE
RLLGTLRAMNAGDAAEQVIRQVEKLARNAERASRDARLVKEDHSSSQISAHGSLIKKRPI
SQDEEMLAHNLEVASKRGRYIADTDSTFSGQQTADSGHGSTSANGVSPNVSILNGDLSPV
EQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKIPPPLTRLGKSEVI
GQLGSASSPAQVAAPSFLPASSVPSPMSAMQIPYSSASITSESSPEASIVNSVSADSKRD
PRRDPRRQDPRLAVPPEAVLPTVVDFGDVQSKLDDFNSNKPQLSAMVGGKTASSPLLSKK
KSDDEILGSSLHGTSELIPKEVVQDGFQETKPTAEVGLSSDVAFSSEQITEDDIVKAEDI
QMDESETPSNVELDHSPPAVANMAAFEETGKDLPVVPSYIELNGEQEASVRKLLFEQIME
SCKHPNGKECGRMGMSLIARLVAQSAAADDLVEMLKNHILEDYQLQKGHELVLEVLYYLY
SISGSDSAESSACAVTYEKFLLEMAESLLLKFPASDKSLSRLLGEAPVLPSSVLKLLDDL
CNSDISDYHGKSLRDADRVTQGLGAVWSLILGRSHYRQSCLDIALKCALHSQEEIRAKAI
RLVANKLFQLSYVAETIEHFAKSMLFSAVNQNASDVEACQPGLNEQLDEGKIGSQNTSSS
GSQVPFSEAATFESESIGGAQPLAQGISSLSLSEAQRLISLFFALCMKKPSLLRLVFDAY
GQAPRPVKQAVHRHIPVLIRALGSSYSELLQIISDPPQGSENLLMLVLQILTEETVPSPD
LITTVKHLYETKLKDVSILIPMLPSFSKSEVLPIFPQMVNLPPDKFQKALAHILQGSAHT
GPALTPAEVLVAIHDIVPEKDGVLLKKVMDACSTCFEQRTVFTQQVLAKALNQMVDRTPL
PLLFMRTVIQAIDAFPALVDFVMEILSKLVSKQIWKMPKLWVGFLKCVSQTQPHSFGVLL
QLPPPQLESSLNKYTSLRGPLTAFASQPNIRASLPRTTLSVLGLTSETHVQQPHVASSLA
SGASSSVHGTTMT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcccgggaccaggcgctctccctcctcgccgccgccaacaaccacggcgac
ctggccgtgaagctctcctccctccggcaggccagggacatcctgctcgcgatcgacccc
gccctcgcctccgagctcctcccttacctggccgagctgcagtcgtcgcccgaggccctc
gtccgcaaatccctcgccgagactattgaagaacttggactgaaaatgttggagcattct
tgtgtgttaatgccggtattactggcatttttaagagatgttgactccatggttgctaag
caatctataatcagcggtaccaaaattttttgcagagttctggaggagatgacagtgcag
ctaaatatccgtggcaaaattgagagatggcttgaagatatgtggctgtccatgctcaag
ttcagagagaacattgttaccacggcaatggagcctggctgtattagtacaagattgttg
gcattgaaatttttggagagatatgtcttacttttcacacccgacaacaatgaattggga
aaacctctgcccgaaggtggacaggtgtttaatgtgtcacggctctctgggagtcactct
attattgatcctgttttgctcatgtcagaagcagggatgattcttgactacttactggat
atgttgtccatggccagtggtctaccgggttgtctggcaattgcggttataaattgtctg
gcatccataggaagaaagaggccacaacacttcagcactgtcttcgcagcactgcttgct
ttcgattcaaactgtgaaacagggaagagatatcatgctgccagtgttcgttattcattg
agaactgcctttttaggatttcttaggtgtactagtcccgccattcttgagtctagagag
agactgcttgggactctacgagcaatgaatgcaggggatgcggccgagcaagtaattcgg
caagtggagaagttagctagaaatgctgagcgagcatcacgtgatgcccgtttggtcaag
gaagatcattcttcaagccaaatatctgctcatggaagtttgattaagaaaaggccaatt
tctcaagatgaagaaatgttagcccacaatctggaagtggcatccaagcgaggtcgatat
attgctgataccgactcaactttttcaggtcaacaaacagctgattctggccatggttcc
acctctgcaaatggtgtatcccccaatgtttcaattttaaatggtgatttgtcacctgtg
gaacaaatgattgctatgattggtgctttgctggcggaaggggaaagaggcgccgaatca
cttgaaatccttatttccaaaatccatcctgatttactagctgatattgtgataactaat
atgaaacacttgcctaagattcctccacctttaacaaggcttggaaaatctgaagtaatt
ggacaattaggttctgcaagtagtccagcacaagttgcagcaccttcttttcttcctgca
agttctgttccatctccaatgtccgctatgcagataccatattcctctgcttctattacc
agtgaatcatctcctgaagcatccattgtcaatagcgtctctgcagattctaaacgtgat
ccaagaagggatccccgccgccaggatccacgattagcagtgcctcctgaagctgtatta
cccactgtggttgactttggagatgtgcaatctaaattagatgattttaattcgaataag
ccgcagttatctgcaatggtgggtggtaaaacagcttcatcacctttactatctaaaaag
aaaagtgatgatgagattttgggatcatctttgcatggtaccagtgaattaattccaaaa
gaggtggttcaggatggttttcaggaaactaaacctactgccgaagttggtctttcttca
gatgtagcgttttcttctgaacaaataactgaggatgatatagtgaaagcagaggacata
cagatggatgaatctgagacaccatcaaatgttgaattagatcacagtcctccagctgtt
gccaacatggcagcctttgaggagacaggaaaggacctacctgttgttccatcctatatt
gagcttaatggagaacaggaagccagtgtcagaaaattgttgtttgagcagataatggag
tcatgcaagcatccaaatgggaaagaatgtggacgtatggggatgtcattaattgctcga
cttgttgctcagagtgctgctgctgatgatttagttgagatgctgaagaaccacatcctt
gaggattaccaattacaaaagggacatgagcttgtgttggaagtcctctattatctatat
tcgatatctggatctgattcggctgaaagctccgcatgtgctgtcacatatgaaaaattt
ctcttggaaatggctgaatctttgctactcaagtttccagcttctgacaagtcattgagt
agacttcttggtgaagctccagttttgcccagttctgtcttgaaacttttagatgatctc
tgcaattctgacatttctgattaccatggaaaaagtctgcgtgatgctgatcgtgtcacc
cagggccttggtgctgtgtggagtttgattttgggccgttctcattacaggcaatcctgc
ttggatatagctttgaagtgtgctcttcattcacaagaggaaatccgagctaaagctatt
cgtctggtggctaacaaactctttcagctgagttatgttgctgagactattgagcatttt
gcaaaaagtatgttattctcagctgttaatcagaatgcttcagatgttgaggcttgccaa
cctggcttgaatgaacagctggatgaagggaagattggaagccagaatacttccagcagt
ggttctcaagttccattttcagaggctgcgacttttgaaagtgaatctataggtggcgca
caacctctggcccagggcatctcttctttatctttgtctgaagctcaacgactcatttct
ttgttttttgctttgtgtatgaagaaacctagcctacttcgccttgtgtttgatgcttat
ggtcaagcaccgagacctgtaaagcaggctgtgcatcgccatatccctgttcttatacgg
gctttagggtcatcttattctgaattgctgcaaataatatcagatccgcctcaaggaagt
gaaaatcttttgatgctggtgctccaaatattgaccgaggaaacagtaccttctccagat
ctgataaccactgtcaaacacttatatgaaactaagctgaaggatgtttcaatccttatc
ccaatgttaccctcattttccaaaagcgaggttttacccatcttccctcaaatggtgaac
cttcctccggataagttccaaaaggcacttgcccacatattacagggttctgctcatact
ggtcctgctttgacgccggcagaagtgttggttgccatacatgacattgttcctgagaag
gatggtgttctgctgaaaaaggtgatggatgcttgctcgacttgttttgagcagcggacg
gtttttacccagcaggtgctagcaaaggccttaaaccagatggttgatcgaactccattg
cctcttctgttcatgagaacagtcattcaggccattgatgcatttcctgctctggttgac
tttgtaatggagattctctccaaactggttagtaagcagatttggaagatgcctaagctt
tgggtgggcttcttgaaatgcgtatcccagacgcagccacattctttcggcgtattgttg
cagttgcccccgccgcaacttgagagttctttaaataaatatacctccttgagagggcct
cttactgcttttgcaagtcaaccaaatattagagcttcgctacccaggacgactctatcg
gttcttggcctcacaagtgaaactcatgtccagcaaccgcatgttgcatcttccctggcc
tcgggcgcaagctcttcggtccatggaacgacgatgacatga
DBGET
integrated database retrieval system
