Eucalyptus grandis (rose gum): 104449636
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Entry
104449636 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104449636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104449636
03019 Messenger RNA biogenesis [BR:
egr03019
]
104449636
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104449636
RNA polymerase I system
104449636
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
104449636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW6_SPT51-2
Spt5-NGN
KOW5_SPT5
KOWx_SPT5
KOW7_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
104449636
NCBI-ProteinID:
XP_010062167
UniProt:
A0A059BSZ9
LinkDB
All DBs
Position
6:complement(38403558..38412840)
Genome browser
AA seq
1041 aa
AA seq
DB search
MARRRDEEEDDMEPDEEDDYEEREALEDDYEEEEEEEEEEDFGKTGAXKKRRRSDFIDDV
AEEDDDTEEDDDDDEDFGGGGGGGGGGKRQRVKRRSGSEFFDLEAQVDSDEEEDEDDGED
DFIDNGADLPDDDDNRQIHRRPLLPREDDQEDVDDLERRIQARYARSAHTEYDEETTDVD
QQALLPSVRDPKLWMVKCAIGREREAAVCLMQKAIDRGPELQIRSVVALDHLKNYIYIEA
DKEAHVREACKGLRNIFSQKVMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGKYKGDLA
KVVDVDNVRQRVTVKLIPRIDLQAVANKLEGREVVKKKAFVPPPRFMNVEEARELNIRVE
RRRDPMTGDYFENVAGMMFKDGFLFKTVSMKSISSNNIKPTFDELEKFRKPGESGDGDIG
SLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEK
ELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHALIILSDTTKEHITVFADDVVESSEVTS
GITRIGDYELHDLVLLDNTNFGVIIRVESEAFQVLKGVPDRPDVITVRLRDIKSKIDKKF
SVPDRNKNTISVKDVVRIVEGPSKGKQGPVEHIFRGVVFIYDRHHLEHAGFICCKSVSCT
VVGGSRTNGDRHGDSLSRFSNLRPSQIPPSPRRFSGGRPPISSGGRHGGGRGHDALAGTT
VKIRQGPYKGYRGRVVEVKGQSVRVELESQMKVVTVDRSLISDNVVVSTPYRDSRYGVGS
ETPMHPSRTPLHPFMTPMRDPGATPIHDGMRTPMRDRAWLPMSPPRDDYEDANPASWGSS
PRYQPGSPPSRTYDAPTPGSGWATTPGGSYSEAGTPRDSNSAYANAPSPYLPSTPGQPMT
PSSASYLPGTPGGQPMTPGTGGLDVMSPVIGGENEGPWFMPEILVNVSRPGEESVGVIRE
VLPDGSCRVALGPSGNGETVTLLPNEMEMVVPRKSDKIKIVGGQLRGRNGKLMGVDGDDG
IVKLDNLDVKILDLGILAKLA
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgccgcagagacgaggaggaggacgacatggagcccgacgaggaggacgactac
gaggagcgggaggccctggaggacgactacgaggaggaggaggaggaggaagaggaggag
gacttcggcaagaccggggcgngcaagaagcggaggagatcggacttcatagacgacgtc
gcggaggaggacgacgacacggaggaggacgacgatgacgacgaggatttcggcggcggc
ggcggcggcggcggcggggggaagaggcagcgcgtgaagaggagatcggggtcggagttc
ttcgatctcgaggcgcaggtggatagcgatgaggaagaggacgaggacgacggcgaggac
gattttatcgataatggggccgacctacctgatgatgatgataatagacagatccatcgg
cgacctttgcttccccgtgaggatgatcaggaggatgttgatgatcttgaaagaaggatt
caggcaagatatgctaggtctgctcatactgaatatgatgaggagacaacggatgtagac
cagcaggctctcttgccttctgtcagggatccaaagctatggatggtgaaatgtgcgatt
ggtcgtgagagagaggcagctgtgtgcctaatgcagaaagccattgatagaggacctgaa
ttgcaaattaggtcagtcgttgcacttgaccatctgaaaaattacatatacattgaagcg
gacaaagaggcccatgtcagggaggcatgcaaaggtcttcgaaatatattctcacaaaaa
gtaatgctcgtcccaattagagaaatgacggatgtcctttcagttgaaagtaaggcaatc
gatctttctagagacacatgggtccgaatgaagatagggaagtacaaaggagaccttgcc
aaagtggtagatgtggataatgtccgccaacgagttacagtgaaattaataccaaggatt
gatttgcaagctgttgcaaataagctggaaggtagagaggtagtgaagaagaaagcattt
gttcctcctccacgatttatgaatgttgaagaggccagggaactgaatatccgtgtggaa
cgtaggcgagatccaatgactggtgattatttcgagaacgttgcgggcatgatgtttaaa
gatggtttcttgttcaaaactgtatccatgaaatcaataagctctaataatataaagccc
acgtttgatgaacttgagaagttcagaaagcccggtgagagtggggacggtgatataggt
agtctgtcaaccctatttgcgaacaggaaaaagggtcatttcatgaagggtgatgctgta
attgtcgtgaagggtgatcttaaaaatttgaagggttgggttgagaaagtcgaggaagag
aatgtacatattcgaccagaaatgaaaggccttcctaaaacactggctgttaacgagaaa
gaactttgcaagtactttgaacctgggaatcatgttaaggtcgtttctggtacccaagaa
ggtgctactggtatggttgtaaaggtggagcaacatgcgctgatcattttgtcagataca
acgaaggaacatattaccgtttttgcagatgatgttgttgagagttcagaggtaacatct
ggaataaccagaattggagactatgagcttcacgaccttgtgctgctggacaataccaac
ttcggtgtcataattcgtgttgaaagtgaagcttttcaggttcttaagggagttccagat
agacctgacgtcatcactgttagattaagagacataaagtccaagatcgataagaaattt
agtgtcccagatcgcaacaagaacactatatccgtgaaggatgttgttaggattgtggag
ggtccatccaaaggaaaacaaggacctgtcgagcacatatttagaggagttgtgtttatt
tatgatcggcaccatcttgagcatgcgggttttatctgttgtaaatctgtttcatgcact
gttgtgggaggatcacgaacaaatggtgatagacatggtgattcattgtcaaggttttcc
aatttgagaccatcccagatacccccatcgccaaggagattctctggagggagacctcca
attagctctggaggaaggcatggtggtgggaggggccatgatgctttggcaggtactacg
gtcaagattcgccaaggtccttataagggataccgtgggcgtgttgtggaagtgaagggt
cagtctgtcagagtcgagctggagtcacaaatgaaggttgttacagtggaccgcagtttg
atttctgataatgttgttgtttcaactccctaccgagattcaagatatggtgtgggtagt
gagactcccatgcatccttctagaactcctttgcatccatttatgactccgatgagagat
cctggagcaacacctattcatgatggaatgagaacacctatgcgtgacagagcatggctt
ccgatgagtccaccaagggatgattatgaagatgcgaatcctgcttcttggggaagtagt
cctcggtatcagccaggaagtcctccttcacgtacatatgatgcacccacaccaggttca
ggttgggcaactacacctggtggcagttatagtgaagctggtacaccaagggatagcaat
tctgcctacgcaaatgctcctagcccttacttgccatccactcccggtcaacctatgacg
ccaagttcagcatcttatctgcctggcactccaggagggcaaccaatgacgcctggaacc
ggtggactagacgtcatgtctcctgttataggtggggaaaatgaaggaccatggtttatg
cccgaaattctggttaatgtgtccagaccaggagaagagagtgttggagttatcagagag
gttcttcctgatggctcctgtcgggtagctcttgggcctagtggcaacggggagacagtg
acacttcttcctaacgaaatggagatggtggtaccaaggaaatcggataagatcaagatc
gtcggtggccaattacgtggtcgcaatggcaaattgatgggtgtggatggcgatgatggt
attgtgaaactggacaatcttgatgtcaagatattggatttgggaattctggcaaagtta
gcataa
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