Eucalyptus grandis (rose gum): 104450366
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Entry
104450366 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104450366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104450366
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
104450366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_16
TPR_8
TPR_17
TPR_CcmH_CycH
TPR_19
TPR_9
TPR_12
BTAD
TPR_7
TPR_NPHP3
TPR_P4H
Motif
Other DBs
NCBI-GeneID:
104450366
NCBI-ProteinID:
XP_010063190
LinkDB
All DBs
Position
6:47982612..47994603
Genome browser
AA seq
1169 aa
AA seq
DB search
MTPSFASDLGCVCGRKQRVRKRKWRKRRSISKSAKLDPNNAAAFKYLGHYYGEVASDGAQ
RAVKCYQRAVVLNPDDQESGEALCDLLDQGGKESLEVAVCKEASEKSPRAFWAFRRLGYL
QVHQKRWSEAVPSLQQAIRGHPTCSDLWEALGLAYQRLGMYTAAIKSFGRAIELEETRVF
ARIESGNIFMMLGSFRKGIEQFRQALDISPENLSAYYGLSSGLLGLAKECINTGAFTWAA
SLLEEASKVANESTQLTGNVSSLWKMYGDIQIAYATCFPWMIDDQNSELEADAFKSSVHS
WSETCHAAVESARISYQKALRLAPWQANIYADIAMSLDLRSKLIKISTYKSDSWQLPEKM
ALGALLLEGHNYEFWVALGCLSDNHALKQHCLIRALQLDVSLAVAWAYLGKVYRKVADKQ
LTKQAFDSARSIDPSLAFPWAGMSADYCAREDAAEDAFEGCWRAVQTLPLPEFQIGLAML
ALPSGHSSSSQVFGAICQAVQCAPYYPESHNFKGLICEARLDYQSAAASYRLARFAINSF
STTVPESSVRDVTINLARALLKAGNALEAARECEAVKTQGTLDAECLQLYALSLWQLGNN
ELALSVTRNLVAIISTMEKATARATAGFICRLLYFISGMDSAINSILKMPKELFESPKVS
FIVSGIHALDKNNRLNQIVSVGRRFLSSLEEMEGMHFLIALGKLVKNESGPGLGYRTGIH
HLQKAVHMYPSSNLLRQLLGYLLLSSKEWNDSHLATRCSVISFSEIPRKEGFKSSFEILG
AGAVACYAIGNSNPKFSFPTCTYQCLQEPRCIQQLQKCLRQEPWNHSARYLLILNLLQKA
REERFPKHLSVILNRLIRVALSNELYAGTSNCYPYRKFHLLLSAAELYFQEGSQVECFNN
ATDASRLPLPNGYLFXAHLLLSRAYAVAGDLKSSRKEYERCLDLGTNFHIGWVCLKFMEV
HYEMQIDKSKIDLRFYECLKEREKSDVMWEAIFNLARGLISLWNHDFPSAESFLEQACLL
MDSNSGMSLCFGVVCMELAKLGYGSQFLSLALRHLSKAQETALVPLPVVSTLRAQAEGSL
GSKEKWENNLCLEWFTWPPEMRPAELFFQMHLLAKDVKSAHDSTSSVAACQTPQKWVCRA
IHTNPSCLRYWKVLQRLVEKIERSSENQY
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgagcttcgcttccgacttgggctgtgtttgtgggagaaagcagcgggttcga
aagagaaaatggagaaagcggcggagcatttcgaaatcggctaaattggaccctaacaat
gcagctgcgttcaaatatttgggccattactatggtgaagtggcctctgatggtgctcag
agagctgtcaagtgttaccagagagccgttgttctcaatccggacgaccaagaatctggg
gaggcattatgtgatttgttggaccaaggaggaaaggaaagtttggaagtggcggtttgc
aaagaagcatcggagaaatcaccaagggctttctgggcttttcgaagattgggttatctg
caggttcatcaaaagagatggtccgaggctgtgccgagtcttcaacaagctattcgaggt
catcctacctgttctgatttgtgggaagcattgggtcttgcctaccagcgattaggcatg
tatactgctgcaatcaagtcttttggacgggccattgaactggaagaaaccagagttttt
gcccggattgaaagtggaaacatcttcatgatgcttggttcctttagaaagggaattgaa
caatttcggcaagctctggacatttcacctgaaaatttgtcggcatactatggactctct
tctggcctgcttggtctggcaaaagaatgcatcaacacaggagcgtttacatgggctgcc
tcactcttagaggaggcatctaaagttgcaaatgagagtactcaactcactggaaatgta
tcatccctttggaagatgtatggtgatattcagattgcgtacgccacttgctttccatgg
atgattgatgaccagaattcagagcttgaagcagatgcattcaaatcttctgtacattct
tggagtgagacctgtcatgcagcggtggagtcagcccggatttcataccagaaagctttg
cgtttggcaccatggcaagcaaacatctatgccgatattgctatgagtcttgacctgaga
tccaagttgatcaaaatttccacatacaaatccgattcttggcagttaccagagaagatg
gctttgggtgcattgctgcttgaggggcataattatgagttctgggtggcactgggatgt
ttatctgataatcatgctttgaaacaacattgtttgatcagagcattacagttagatgta
tctctggctgttgcttgggcataccttgggaaggtctacagaaaagttgcagataagcaa
cttacaaagcaagcatttgatagtgcaagaagcatagatccttctcttgcgttcccatgg
gcaggcatgtcagctgattattgtgccagggaagatgcagctgaagatgcttttgagggc
tgttggagagctgtgcagacattgccgcttcctgagttccaaattgggctggcaatgctt
gctttaccttcagggcattcctcatcttcacaggtttttggagccatatgtcaagcggtc
cagtgcgcaccttattaccctgaatcgcataatttcaaggggctcatttgtgaggcacgg
cttgattatcagtctgctgctgcatcttacaggctggcgcgatttgccatcaatagcttt
tctacaacagttccagaatctagtgttagagatgtaacgatcaatttggcaagagcgctt
cttaaggctgggaatgctctagaggcagcaagggagtgtgaagctgtgaagactcaaggt
actcttgatgcagaatgtcttcaactatatgctctctctctttggcagcttgggaacaat
gaacttgctctttctgtgacgagaaaccttgttgctattatttctaccatggaaaaggca
actgcaagagccactgctggtttcatttgcagattgttatattttatttctggaatggat
tcagcaatcaatagcattttaaaaatgccaaaggaattatttgagagtcctaaagttagc
tttattgtgtctggcatccatgctcttgataaaaataaccggctcaatcagattgtttct
gtcggtcgtcgatttcttagttctcttgaagaaatggagggaatgcacttcttaatagct
cttggtaagctggtaaagaatgagtcaggacctggccttggttatcggactggaattcat
catcttcagaaagcggtccacatgtatcccagtagtaatttgttaaggcaattgcttggt
tatctcttgctatcaagtaaagaatggaatgattcacatcttgcaacaaggtgcagtgtc
ataagcttctccgaaattccccgaaaagaaggtttcaaatcttcatttgaaatccttggt
gctggagcagttgcttgctatgccatcggaaacagcaatccaaagttttctttcccaaca
tgtacatatcagtgtttgcaggagcctcgatgcattcagcaactgcaaaaatgcttacgt
caggaaccttggaatcatagtgctcggtacttgctcatacttaatcttctgcaaaaggca
cgggaagagagatttcctaaacatctttctgttatactgaatcggctgattcgcgtggct
ctgtccaatgaattatatgctgggacaagtaactgctatccgtatagaaaattccatctc
ttactttctgctgctgagttgtactttcaggagggaagtcaagtggaatgtttcaataat
gcaacagatgcatctaggcttccacttcctaatggctatctttttntcgcgcacttgcta
ttatctcgtgcatatgctgttgctggggacctgaaaagctctcgtaaagaatatgagaga
tgcttggaccttgggacaaattttcatattggttgggtctgtcttaaattcatggaggta
cattatgagatgcaaattgataaaagcaaaatagacttgaggttctatgaatgcttaaag
gagagggaaaagtcagatgtaatgtgggaagctatcttcaacctggcacggggcttgatt
tctttatggaaccatgattttccctctgcagaaagcttccttgaacaagcttgtttgttg
atggattctaacagtggaatgtctctctgcttcggggtcgtatgtatggaattagccaag
ctagggtatggttctcagttcctctcgcttgctctgagacatctctctaaagcacaggag
acggctctagttccattgcctgttgtctcaacattgcgggctcaagcagaaggaagtctt
ggttctaaagagaaatgggagaacaatctttgccttgaatggtttacttggccaccagaa
atgaggcctgcagagctcttctttcagatgcatttactcgcaaaagatgttaaatctgca
catgactctacttcctctgtggcggcttgccaaactccacaaaagtgggtttgtcgagca
atccatacaaacccatcttgcttaagatactggaaggtgttgcaaaggctcgtggagaaa
attgaacgctcatcagaaaatcagtactag
DBGET
integrated database retrieval system
