Eucalyptus grandis (rose gum): 104450569
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Entry
104450569 CDS
T03547
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104450569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104450569
Spliceosome [BR:
egr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104450569
Complex C
U5 SnRNP specific factors
104450569
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104450569
NCBI-ProteinID:
XP_010063475
LinkDB
All DBs
Position
6:complement(50856341..50868210)
Genome browser
AA seq
2351 aa
AA seq
DB search
MWNGAGNGQIAPPGTSGPSAIPPPPAPQPSYTVLPSPAEAEARLEEKARKWMQLNSKRYG
DKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENM
PMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRF
PPFDDEEPPLDYADNLLDVDPLEPIQLELDDEEDSAVCTWFYDHKPLVKTKLINGPSYRK
WHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDME
KGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCIYHTPMVMYIKTEDPDL
PAFYYDPLIHPITSINKERREKKAYDDEDEDDFSLPEGVEPLLSDTQLYTDTTAAGISLL
FAPRPFNTRSGRMRRAEDIPLVSEWYKEHCPPTYPVKVRVSYQKLLKCFVLNELHHRPPK
AQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLK
PVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHV
GQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIV
PLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNK
ARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGA
TVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPI
PFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHL
LTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADS
EPPPLLVYKWCQGINNLQSVWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNI
ADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPP
QMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENM
VGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNL
LFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRV
RQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLN
SKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQL
IPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQ
KDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGI
LEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINR
ANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDAL
EIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDV
QLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKP
LLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTN
VYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEE
VAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGD
LILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEP
HHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQ
QIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLY
LRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRC
IAMPPQWGTHQQVNLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTNHARVLENNK
QWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRLNKDTGSNPAGYLPTHYEKVQMLLS
DRFLGFYMMPDNGPWNYNFMGVKHTSSMKYGMKLGTPREYYHEDHRPTHFLEFSNMEEGD
TVEGDREDTFT
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggcgccggcaacggccagattgcgccgccggggaccagcgggccctccgcg
atcccgccgccgcccgcgccccagccctcgtacaccgtcctgccctcgcccgccgaggcc
gaggccaggctcgaggagaaggcgcggaaatggatgcagctcaactcgaagcggtacggg
gacaagaggaagttcgggttcgtggagacgcagaaggaggacatgcctcccgagcacgtc
aggaagattattcgggaccatggggacatgtcctctaaaaaatatcgccatgataaacgt
gtatatctcggagctttgaagtttgttcctcatgcggtttataagctcctagagaacatg
cccatgccttgggagcaggttcgcgacgtgaaggttttataccatatcaccggggcaata
acatttgtcaatgaaataccttgggttgttgagcccatctatttagctcagtggggtacg
atgtggatcatgatgcgaagggaaaaaagggatagaaggcatttcaagagaatgcggttt
ccaccttttgatgatgaggaacctcctttggattatgctgataatctattggatgtcgat
cctctggaaccgattcagttagagttagacgacgaagaagattcggctgtatgtacttgg
ttttatgaccataagcctcttgtgaaaacaaagcttataaatggtccgagttatcggaag
tggcatctttctctgccaattatggccaccctccatcggctagcagggcagcttctttct
gatttgatcgaccgcaactacttttatctgtttgatatggaatcctttttcactgctaaa
gcactgaacatgtgcataccaggaggtcctaagtttgagccgttgtaccgggatatggaa
aagggagatgaggattggaatgagttcaatgacattaacaaactcattattcgatctcct
cttaggacagaatacaggattgcatttccacatctttacaacaataggcctcggaaagta
aagctttgtatataccatactcccatggtcatgtatataaagacggaggatcccgattta
ccagccttttattatgatcctttgattcatcctattaccagcattaacaaggagcggcgt
gagaaaaaggcatatgatgatgaggatgaggatgatttctccttgccagaaggcgttgaa
cctttgctgagtgatacccagctttataccgacaccacagctgcaggaatctcattgtta
tttgccccacgtcctttcaacacaagatcagggcgcatgcggcgggctgaagatataccc
cttgtgtcagagtggtacaaggagcactgtcctccaacatatcctgtgaaagttcgagtc
agctatcaaaaattgttgaaatgtttcgtcttgaatgagctacatcatcgacctcctaag
gctcaaaagaagaagcatttgttccggtctcttcaggcaaccaagtttttccagactact
gagctggattgggcggaggcgggcctgcaagtttgtaaacagggctacaatatgttgaat
ctattgatacacaggaagaatttgaactatcttcaccttgactacaatttcaatcttaag
ccagtgaagactctcacgacaaaagaaaggaagaaatcacgatttggtaatgcatttcat
ctctgtcgtgagattctgcgtcttaccaagcttgtggttgatgccaatgtccagttcaga
ctagggaatgtggacgcattccaattggctgatggtttacagtatacattttcgcacgtt
ggacagttgactggcatgtaccgatataagtaccgactgatgaggcagattaggatgtgt
aaagacctgaagcacttaatttactatcgcttcaatacggggcccgtggggaagggacct
ggttgtggtttctgggcgccaatgtggagggtgtggctgttctttctgcgtggtatagta
cctttgcttgaaaggtggttagggaacttattggcgcgtcaatttgaaggacgccattca
aaaggggttgctaagaccgtaacgaagcaacgggtggaaagtcattttgatctggagctt
cgagctgctgttatgcatgatgttcttgatgccatgccagagggcattaagcagaataaa
gcaaggaccatcttgcagcatcttagtgaagcatggcgctgttggaaagccaatattcct
tggaaggttcccggtcttccagttcccattgagaacatgattcttcgttatgttaaatcg
aaagctgattggtggacaaatgttgcgcattataatcgtgaacgtataagaagaggtgcg
acagttgataagactgtgtgtcggaaaaatcttggaagattgactcgcctctggttgaag
gctgagcaggaacgacagcataattatctgaaagatgggccatacgtcacaccagaagaa
gctgtggcaatttataccacgactgtgcactggttggaatcaagaaagttctctcccatt
cctttccctccgttgtcatacaaacatgatacgaagctgcttattttggctctagagaga
ttaaaggaatcttacagtgttgccgtgagattgaatcagttgcaaagggaggagttgggt
ctcattgaacaagcatatgataatcctcatgaagctttgtcacgaataaagcgtcacttg
cttacacagcgtgcctttaaagaggtgggcatagagtttatggacctgtatagctatttg
attcctgtatatgagattgagcctcttgagaagatcactgatgcttatcttgaccagtat
ctgtggtatgaaggtgataaacgtcatctgtttcctaactggattaagcctgcagattca
gaaccacctccgctcttagtttataagtggtgtcagggtataaataacttacagagcgta
tgggatacaagcgaggggcagtgtgtagtcatgcttcaaaccaagttcgagaagttcttt
gaaaagatcgacttgaccatgttaaataggcttcttcgcttagttcttgatcacaacatt
gctgattatgtaactgcgaaaaacaacgttgtcctttcttacaaggatatgagccataca
aactcttatggtcttattaggggacttcagtttgcttcttttgttgtccagtattatgga
ctcgtgttggatctactgcttctgggattgactcgagccagtgagattgctggtccacca
cagatgccaaatgagttcattacgtattgggacacaaaagttgagaccagacatcccatt
cggttgtattctcgttacatagacaaagttcatatcctgtttagattcactcacgaggag
gcccgtgaccttatccagcggtaccttactgaacatcctgaccccaataatgaaaacatg
gtcggatacaataacaagaaatgctggcccagagatgcaaggatgaggcttatgaaacat
gatgttaatcttgggagaagtgttttctgggacatgaagaatcgtcttcctagaagtatt
acaaccttagagtgggagaacagttttgtttctgtttatagcaaggacaatccaaacttg
ctattcagcatgtgtgggttcgaagtccgcatactaccgaagataagaatgacgcaggaa
gcgtttagcaataccagggatggtgtttggaatttgcaaaatgagcagaccaaagaacgg
acagcagttgcatttttgcgggttgacgatgaacacatgaaagtttttgagaatcgtgtg
aggcaaattctgatgtcctctgggtcgacgacattcaccaagattgttaataaatggaat
actgccctcataggactcatgacatacttccgtgaagcgactgtgcatacacaagagctt
ttggatttgttggtcaaatgtgagaacaagatccaaacacgtatcaagattggattgaat
tctaaaatgcctagcaggtttcctcccgtcattttttacaccccgaaggaaattggaggt
cttggtatgctgtcaatgggtcatatattgattccacaaagcgatcttcgatacagcaag
caaacggatgttggtgtaacccattttagaagtggaatgagtcacgaggaggatcaattg
ataccgaatctttatcgctacatacagccatgggaaagtgagttcattgattcacagcga
gtgtgggctgaatatgccttgaagaggcaagaggcacaggcacaaaacaggcgtttaacg
ttggaggatttggaggattcatgggacagggggatacctcgtataaatacactgtttcag
aaggataggcatacgcttgcgtatgacaagggatggagggtacggactgatttcaagcag
taccaggtcttgaaacaaaaccctttttggtggacacaccaaaggcacgatggtaaactt
tggaacttgaataactatcggactgatgttatccaagctcttggaggtgttgaagggatc
ctggagcacaccttattcaaaggaacatattttccaacatgggagggtctcttttgggaa
aaggcatccggttttgaagagtcaatgaagtacaaaaagttgacaaatgcacagagatct
ggtcttaaccagattccaaatcgtaggtttaccttgtggtggtcgcctacaattaataga
gcaaatgtttacgtgggtttccaagtgcagttggatctcactgggatatttatgcatggg
aagattcctactttgaagatatctctaatccagatattccgtgctcatttgtggcaaaag
atccatgagagtgttgttatggatctttgccaagttcttgaccaggagttggatgcatta
gaaattgaaactgtccagaaggaaactatccacccgaggaagagttacaaaatgaatagt
tcttgtgctgacattctccttttcgctgctcatagatggccaatgtcgaagcccagtctt
gtggctgaatctaaggacgtttttgaccaaaaagcaagcaataagtattggatagatgta
cagcttcgttggggagattatgattctcacgatattgagcgttacacaagagccaaattc
atggattatacaacggataacatgtctatatatccatctccaactggtgttatgattgga
cttgatcttgcttataacttgcattctgcatttggtaattggtttcctggttccaaacca
ctgcttgcacaggctatgaataagattatgaagtcaaatccagcattgtatgtgctccgc
gagcgcataaggaaaggtttgcagctctattcttcagagcctacagagccatacttgtca
tctcagaattatggagagattttcagtaatcaaataatatggttcgttgatgacactaat
gtttatcgtgtcacaattcacaagacattcgagggaaatctgaccacaaagcctatcaat
ggtgccattttcatattcaatccaaggactggccagcttttcctgaaggtcattcataca
agtgtttgggctgggcaaaagcgtctaggtcagctggccaagtggaaaacagcagaagaa
gtagctgctcttgtgcgttctttgccggttgaagaacaaccaaagcagatcatcgtcact
cggaaggggatgcttgatcctttggaggttcacttgttggatttccccaatattgttatt
aaagggagtgagctgcaactaccgttccaagcttgcttgaaaatagaaaaatttggtgat
ctgattctgaaggcaacagagcctcaaatggttctgtttaacatatatgatgactggctg
aagagcatatcatcttacactgcattctctcgtctcattttgattctccgtgctcttcat
gtgaacaatgagaaggctaaaatgttactaaaacctgacaagacaattgtcactgaacct
catcatatttggccgtctctcacagatgatcagtggatgaaggttgaagtagctttgaga
gacttgattctctcggattatgcgaagaagaacaatgtgaatacttcagctcttacacag
tctgagattcgtgatattatacttggtgctgagattacccctccatcgcaacagaggcag
caaattgcagaaattgagaaacaggcaaaagaagccagtcagcttacggcagtcacaaca
aggaccaccaatgtgcatggtgatgaactgattgtgaccaccacaagtccttatgaacaa
gcagcatttgggtctaagactgactggcgtgtgagggcaatatcggcgaccaatctttat
cttcgagtgaaccacatctatgttaattcagaggacataaaggagacaggatatacttat
attatgcccaagaacatattgaagaaatttatctgcatagcagatctgcgaactcagatt
gctgggtacttgtatggtataagcccacccgataatcctcaggtcaaggaaattcgctgt
attgcgatgccacctcaatggggaacacatcagcaagtgaatcttccaagtgcactccct
gagcatgatttcctaaatgacttggagccattggggtggatgcacacacaaccaaatgag
cttccacagttatcacctcaagatctaactaatcatgctcgggttctggagaacaacaag
caatgggatggcgagaagtgcattatcctgacatgcagtttcacgccaggttcctgctca
ttgactgcttacaagctcaccccttcaggttatgaatgggggcgtctgaataaagacact
ggaagcaatcccgccggataccttccgactcactacgaaaaggttcagatgctcctgagc
gacaggttccttggcttttacatgatgccggataatggcccctggaactacaacttcatg
ggggtgaagcacacatcaagcatgaagtatggaatgaaactggggacgccgagagagtac
tatcacgaggaccacaggcccactcacttcctggagttcagcaacatggaagagggcgac
accgtggagggcgatcgtgaagacacatttacttag
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integrated database retrieval system
