Eucalyptus grandis (rose gum): 104450609
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Entry
104450609 CDS
T03547
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104450609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104450609
Spliceosome [BR:
egr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104450609
Complex C
U5 SnRNP specific factors
104450609
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104450609
NCBI-ProteinID:
XP_010063538
UniProt:
A0A059BYN8
LinkDB
All DBs
Position
6:51473605..51485442
Genome browser
AA seq
2351 aa
AA seq
DB search
MWNDAGNGQIAPPGNSDPSTITLPPAPQPSYTVLPSPAEAEARLEGKARKWMQLNSKRYG
DKRKFGFVEPQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENM
PMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRF
PPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVCAWFYDHKPLVKTKLVNGPSYRK
WHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDME
KGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDL
PAFYYDPLIHPIASISKDRREKKAYDDEDEENFSLPEGIEPLLNDTQLYTDTTAAGISLL
FAPRPFDARSGHMRRAEDIPLVSEWYKEHCPPTYPVKVRVSYQKLLKCFVLNELHHRPPK
AQKKKHLFRSLQATKFFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLK
PVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHV
GQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIV
PLLERWLGNLLARQFEGRHSKGVAKTITKQRVESHFDLELRAAVMHDVLDAMPEGIKHNK
ARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGA
TVDKTVCRKNLGRLTRLWFKAEQERQHNYLKDGPFITPEEAVAIYTTTVHWLESRKFSPI
PFPPLSYKHDTKLLILALEKLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHL
LTRHAFREVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADS
EPPPLLVYKWCQGINNLQAIWDTSEGQCVVMLQTKFEKFFEKIDLHFLNRLLRLILDHHI
ADYITEKSNAVLSYKDMSHTNFYGFIRGLQFSSFVVQFYGLVLDLLLLGLTRASEIAGPP
QMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHDEARDLIQRYLTEHPDPNNENM
VGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSLTTLEWENSFVSVYSKDNPNL
LFSMCGFEVRILPKIRMTQEAFSNTRDGVWSLQNEQTKERTAAAFLRVDDEHMKVFENRV
RQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLN
SKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQL
IPNLYRYIQPWESEFIDSQRVWAEYALKRQEALTQNRRLTLEDLEDSWDRGIPRINTLFQ
KDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGI
LEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINR
ANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDAL
EIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDI
QLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPAGIMIGLDLAYNLHSAFGNWFPGSKP
LFAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTN
VYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEE
VAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGD
LILRATEPQMLLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTVVTEP
HHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTTALTQSEIRDIILGAEITPPSQQRQ
QIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLY
LRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRC
IAMPPQWGTHQQVNLPSALPQHDFLNDLEPLGWMHSQPNELPQLSPQDLTNHARVLENNK
QWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRLNKDTGSNPAGYLPTHYEKVQILLS
DRFLGFYMIPDNGPWNYNFMGVKHTSSMKYGMKLGTPREYYHEDNRPTHFLEFSKMEEDD
TAEGDREDTFS
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacgacgctggcaacggccagattgccccgccggggaacagtgacccctccacg
atcactttgccgcccgcaccacagccatcgtacaccgtcctgccctcgccggccgaggct
gaggccaggctcgaggggaaggcgcggaaatggatgcagctcaactcgaagcggtacggg
gacaagaggaagttcgggttcgtggagccgcagaaggaagacatgcctcccgagcacgtc
aggaagattattcgggaccatggggacatgtcctctaaaaaatatcgccatgataaacgt
gtataccttggagctttgaagttcgttcctcatgcagtttataagctcctagagaacatg
cccatgccatgggagcaggttcgcgacgtgaaggttttataccatatcaccggggcaata
acattcgtcaatgaaataccttgggttgtcgagcccatctatttagctcagtggggtaca
atgtggatcatgatgcgaagggagaaaagggatagaaggcatttcaagagaatgcggttt
ccaccttttgatgacgaggaacctcccctggattatgccgataatctattggatgtcgat
cctctggaaccgattcagttagagttagatgaagaagaagattcggctgtttgtgcttgg
ttttatgaccataagcctcttgtgaaaacaaagcttgtaaatggtccgagttataggaag
tggcatctgtctctgccaattatggccaccctccatcggctagcggggcagcttctttct
gatttgattgaccgcaactacttttatctgtttgatatggagtcctttttcactgcgaaa
gcactgaacatgtgcataccaggaggtcctaagtttgagccactctaccgggatatggaa
aagggagatgaggattggaatgagttcaatgacatcaacaaactcattattcgatctcct
cttaggacagaatacaggattgcatttccacatctttacaacaataggcctcggaaagta
aagctttgtgtataccatactcccatggtcatgtatataaagactgaggatcctgattta
ccggccttctattatgatcctttgattcatcctattgccagcattagcaaggaccggcgt
gagaagaaggcatatgatgatgaggatgaggaaaatttctccttgcccgaaggcattgaa
cctctgctgaatgatacccagctttatactgacaccacagctgcaggaatctcgttgtta
tttgccccacgccctttcgacgcaagatctgggcacatgcgacgggctgaagatataccc
cttgtgtcagagtggtacaaggagcactgtcctccaacatatcccgtgaaagttcgagtc
agctatcaaaaattgttgaaatgtttcgtcttgaatgagctacatcatcgacctcctaag
gctcagaagaagaagcatttgttccggtctcttcaggcaaccaaattttttcagactact
gagctggattgggtggaggcgggcctgcaagtatgtaagcagggctacaacatgttgaat
ctgttgatacacaggaagaatttgaactaccttcaccttgactacaatttcaatcttaag
ccagtgaagactctcacaaccaaagaaaggaagaaatcacgattcggcaatgcatttcat
ctctgtcgtgagattctgcgtcttacaaagcttgtggtcgatgccaatgtccagttcaga
ctaggaaacgtggatgcattccaattggctgatggtttacagtatacattttcacacgtt
ggacagttgactggcatgtatcgatataagtatcgactgatgaggcagatcagaatgtgt
aaagacctgaagcacttaatttactatcgcttcaatacagggcccgtgggaaagggacct
ggatgcggtttctgggcaccaatgtggagggtgtggctgttctttctgcgtggtatagta
cctttgcttgaaaggtggttagggaacttattggcccgtcaatttgaaggacgccattca
aaaggggtcgctaagaccataacaaagcaacgggtggaaagtcattttgatctggagctt
cgagctgctgttatgcatgatgttcttgatgccatgccagagggcattaagcacaataaa
gcgaggaccattttgcagcatcttagtgaagcatggcgctgttggaaagccaatattcct
tggaaggttcctggtcttccagttcccattgaaaacatgattcttcgttatgttaaatcg
aaagctgattggtggacaaacgttgcacattataatcgtgaacgcataagaagaggtgca
acagttgataagactgtttgtcggaaaaatcttggaagattgactcgcctctggtttaag
gctgagcaggaacgacaacataattatctgaaagatgggccatttatcacaccagaagaa
gctgtggcaatttatactacgactgtgcactggttggaatcaagaaagttctctcccatt
cctttccctccgttgtcatacaagcatgatacgaagctgcttattttggctctagagaag
ctaaaggaatcttacagtgttgccgtgagattgaatcagttgcagagggaggagttgggt
ctcattgaacaagcatatgataatcctcatgaagctttgtcacgtataaagcgtcacttg
cttacacgacatgcctttagagaggtgggcattgagttcatggatctgtatagttatttg
attcctgtatatgaaatagagcctcttgagaagatcactgatgcataccttgaccagtat
ctgtggtatgaaggtgataaacgtcatctgtttcccaactggattaagcctgcagattca
gaaccacctccgctcttagtttataagtggtgtcagggtataaataacttacaggcaata
tgggatacaagtgaggggcagtgtgtagtcatgcttcaaaccaagtttgagaagttcttt
gaaaagattgacttgcatttcttaaatcggcttcttcgcttaattctcgatcaccacatt
gctgattatataactgagaaaagcaatgctgtcctttcttacaaggatatgagccataca
aacttttatggttttataaggggactacagttttcttcttttgttgtccagttttatgga
cttgtgttggatctactgcttctgggattgactcgagccagtgagattgctggtccaccc
cagatgccaaatgagttcattacttattgggacacaaaagttgagaccagacatcccatt
cgattgtattctcgctacatagacagagttcatatcctgtttagattcactcatgatgag
gcccgtgaccttatccagcggtaccttactgaacatcctgaccccaataacgaaaacatg
gtcggatacaataacaagaaatgctggccgagagatgcaaggatgaggcttatgaaacat
gatgttaatcttgggagaagtgttttctgggacatgaagaaccgtcttcctagaagtctt
acaaccttggagtgggagaacagttttgtttctgtttacagcaaggacaatcccaacttg
ctattcagcatgtgtggctttgaagtccgcatactgccgaagataagaatgacgcaggaa
gcatttagcaataccagggatggcgtttggagtttgcaaaatgagcagaccaaagagcgg
acagcagctgcttttttgcgggttgatgatgaacatatgaaagttttcgagaatcgtgtg
aggcaaattctgatgtcctctggatcgacgacattcaccaagattgttaacaaatggaat
actgccctcataggactcatgacatacttccgcgaagctactgtgcatacacaagagctt
ttggatttgttggtcaaatgcgagaacaaaatccaaacgcgtatcaagatcggattgaat
tctaaaatgcctagcaggtttcctccggtcattttttacaccccgaaggaaattggaggt
cttggtatgctctcaatgggtcatatattgattccacaaagcgatcttcgatacagcaag
caaactgatgttggtgtaacccattttagaagtggaatgagtcatgaggaggatcaactg
ataccaaatctttatcgctacatacagccatgggaaagtgagttcattgattcacagcga
gtatgggctgaatatgctttgaagaggcaagaagctctgacccaaaacaggcgtttaacg
ttggaggatttggaggactcatgggacagggggatacctcgcataaatactctgtttcag
aaggatagacatacgcttgcgtatgacaaaggatggagggtacggactgatttcaagcag
taccaggtcctcaaacaaaaccctttttggtggacacaccaaaggcacgatggtaaactt
tggaacttgaataactatcggactgatgttatccaagctcttggaggtgttgaagggatc
ctggagcacaccttattcaaaggaacatattttccaacatgggaaggtctcttttgggaa
aaagcatctggttttgaagagtcgatgaagtacaaaaagttgacaaatgcacagagatct
ggtctgaaccagattccgaaccggaggtttaccttgtggtggtcgcctacaattaataga
gcaaatgtttatgtgggtttccaagtgcagttggatctcactggaatatttatgcatggg
aagattcctactttgaagatatctctaatccagatattccgtgctcatttgtggcaaaag
atccatgagagtgttgttatggatctttgccaagttcttgaccaggagttggatgcatta
gaaattgaaactgtccagaaggaaactatccacccgaggaagagttacaaaatgaatagt
tcttgtgctgacattcttctctttgctgcccatagatggccaatgtcaaagcccagtctt
gtggctgaatctaaggatgtttttgaccaaaaagcaagcaacaagtattggatagacata
cagcttcgctggggagattacgattctcacgatattgagcgttacacaagagccaaattc
atggactatacgacagataacatgtctatatatccatctccagctggtattatgattgga
cttgatcttgcttataacttgcattctgcgtttggcaattggtttcctggttccaaacca
ctgtttgcacaggctatgaataagattatgaagtcaaatccagcattgtatgttctccga
gagcgcataaggaaaggtttgcagctctattcttcagagcctacggagccatacttgtca
tctcagaattatggagagattttcagtaatcaaattatatggttcgttgatgacactaat
gtttatcgcgtgacaattcacaagacattcgagggaaatctgactactaagcccatcaat
ggtgccattttcatattcaatccaaggactggccagctcttcctgaaggtcattcataca
agtgtttgggctgggcaaaagcgtctaggtcagcttgccaagtggaaaactgcagaagaa
gtagctgctcttgtgcgctctttgcctgttgaagaacaacccaagcaggtcatcgtcact
cggaaggggatgcttgatcctttggaggttcacttgttggatttccccaatattgttatt
aaagggagtgagctgcaactaccattccaagcttgcttgaaaatagaaaaatttggtgat
ctgattttgagggcaacagagcctcaaatgcttctgtttaacatatatgatgactggctg
aagagcatatcatcctacactgcattctctcgtctcattttgattctccgtgctcttcat
gtgaacaatgagaaggctaagatgttactaaagcccgataagacagttgtcactgaacct
catcatatttggccgtctctcacagatgatcagtggatgaaggttgaagtagccttgaga
gacttgattctctcagattatgcaaagaagaacaacgtgaatactacagctctcacacag
tctgagattcgtgatattatacttggtgctgagattacccctccatctcaacagaggcag
caaattgcggaaattgagaaacaggcaaaagaagccagtcagcttacggcagtcacaaca
agaaccaccaatgtgcatggtgatgaactgattgtgaccactacaagtccttatgaacaa
gctgcatttgggtctaagactgactggcgtgtgagagcaatatcagcgaccaatctttat
cttcgagtgaaccacatatatgttaattcagaggacataaaggagacgggatatacttat
atcatgcccaagaacatattgaagaaatttatctgcatagcagacctgcgaactcagatt
gctgggtacttgtatggtataagcccacccgataatcctcaggttaaagaaattcgctgt
atcgcgatgccacctcaatggggaacacatcagcaagtgaatcttccgagtgcactccct
cagcatgatttcctaaatgacttggagccattggggtggatgcactcacaaccaaatgag
cttccacagttatcacctcaagatctaactaatcatgctcgggttctggagaacaacaag
caatgggacggtgaaaagtgcattatcctgacgtgcagtttcacgccaggttcctgctca
ttgactgcttacaagctcaccccttcaggttatgaatgggggcgtctgaataaagatacc
ggaagcaatcctgccggataccttccgactcactatgagaaggttcagatacttttaagc
gacaggttccttggcttttacatgataccggataatggcccttggaactacaacttcatg
ggagtgaagcacacatcaagcatgaagtatggaatgaaactgggaacgccgagagagtac
tatcacgaggacaacaggcccactcacttcctggagttcagcaaaatggaagaggatgac
actgctgagggcgaccgtgaagacacattttcttag
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integrated database retrieval system
