Eucalyptus grandis (rose gum): 104453058
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Entry
104453058 CDS
T03547
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104453058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104453058
Spliceosome [BR:
egr03041
]
Complex A
U1 snRNP components
U1 related factors
104453058
Complex B
104453058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
SMODS
Motif
Other DBs
NCBI-GeneID:
104453058
NCBI-ProteinID:
XP_010065860
UniProt:
A0A059BBS0
LinkDB
All DBs
Position
7:22448651..22469944
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AA seq
1026 aa
AA seq
DB search
MANDTQFSGFQPLQPPVVGSADPPRNFTQPAPVQPWPALPPQQPQQFVSTVPQHFQTPSH
GTVLMNIGLPSAPLHPQFPPPVQHLAPRPGQPVQNVLPPPPPGPLPISQQNKPMASESLR
PHQPSGLVSNNFMPAGSGLRAPLSSSYTFASHGGQQQGNFVSPRPPSLYHQMSQPQASGV
PSGDQVNLPSESQNTTPVTGLPVTSEQPAVSAALALESSGQHNSSEVVQRIQTDWIEHTS
PAGRKYYYNKKTKQSTWQKPFELMTVTERADASTDWKEFTSSDGRTYYYNKATKQSKWEM
PAELKLAREEAKRKLAPGTQSESLPSSSTSLVPVNEPDGADISSSTSQGPTSSPVPAAPL
NASGDTESAVVAESEEISVPVPTSTLVAVVLDTSMDDAEQTVVQQSNEVAADAIDDGTTP
MIDSKKSTIQDVPWSAGVSVQDKEAKNIEVSAEGAETLVEEKLTNSEPSPYATKLEAKAA
FNALLENANIGSDWTWERAMRIIINDKRYGALKTLGERKEAFNEFVGQRKKQDAEGRRFQ
QKKARDNFKQMLEECRELTSSSRWSKVVTLFEEDERFKAIERDKDRKDIFESFIVELEKK
ERERSLEERKKNMREYRQFLESCDFIKASSQWRKLQDRLEADERCSRLEKMDRLEIFQDY
LHDLEKEEEEQRKIQKEEMRKAERKNRDEFRKLMEEHVAAGTLTAKTLWRDYYMMVKDLP
AYMAVASNTAGSTPKDLFEDVAEELQKQYEEDKSQVDDAVKIRKISLTSTWTVEGLKASI
ADDIRGTPISDINFKLVFDDLLERARKKEERVVKKRKRLGDKFFDLLTTIREITPSSTWD
ECKQLVENSHEYSSIGDDIYCQDIFEEYITKLKDHETRKHKEEKAEREKKKRGKEGKRGK
DRREKDRYDREEEESRDNGADSDREILSETRASYKKKKSGEDRERKRHRHIHRTSDCMDI
AEAEHSEKYHRHNGDHKKATQHESTPESDSESRHRRHKRDRRNGSHRSGGYEEELEDGEF
GEDVKK
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgatactcaattttcaggttttcagcctctacagcctcctgtagttggttct
gcagatcctccaaggaattttactcagccagcgcctgttcaaccttggccagcgcttccg
cctcagcaaccacagcagtttgtttcaacagtacctcaacattttcagactcctagccat
ggtaccgtactcatgaatattggattgccttctgcccctctgcatccccaatttcctcca
ccagttcaacatttggctccaaggcctgggcagccagttcagaatgtccttcctcctcct
cctccagggccattgcctatttctcagcaaaataaacccatggcatctgagtcactacga
cctcatcagcctagtggtcttgtttcgaataacttcatgcctgcagggagcggcctaaga
gctcctctgtcatcatcatacacatttgcttctcatgggggacagcagcaagggaacttt
gtttctccaaggcccccttctctctaccatcaaatgtctcaaccacaggcttcaggagtc
ccaagtggggatcaagtcaatctgccatctgaaagccagaacactacccctgtgactggg
ttgccagttaccagtgagcagcctgcagtttctgctgcactagcacttgagtcaagcggt
cagcataactcttctgaagttgtccaaagaattcaaactgattggatagagcatacatct
cctgcaggaagaaaatattattacaacaagaagacaaaacaatctacatggcagaagccc
tttgagttgatgacggtaactgagcgtgcagatgcttcaactgactggaaggaatttaca
agttctgacggaaggacatactactacaacaaggctactaagcagtctaagtgggaaatg
cctgctgaactgaagttggctcgtgaggaagcaaagagaaaattggccccaggaacacaa
tcagagtctttaccttcctcttctacctcattggttccagttaatgaacctgatggtgca
gatatatcatcttccacatctcaaggacctacatcaagcccagttccagcagctcctctt
aatgcctctggggacacagagtcagcagtggttgctgaatcagaagaaatatctgtccca
gtgcctacttcaacgttggtggctgttgtcttggatacatccatggatgatgctgagcaa
actgttgttcaacagagcaatgaagttgctgctgatgcaattgatgatggcacaacccca
atgattgattccaagaagtccactattcaggatgttccctggtcagctggagtatctgtt
caagacaaagaagccaagaatattgaagtgagtgctgaaggggcagagacacttgttgaa
gagaaattaactaatagtgaaccatcaccttatgccactaagctggaagctaaagctgca
tttaatgcacttctggagaatgcaaatattggttctgactggacttgggagcgggcaatg
agaataataataaatgataaaaggtatggtgctttaaaaacactcggagagaggaaggaa
gcattcaatgagtttgttggtcaaaggaaaaagcaggatgctgagggtagacgctttcaa
cagaaaaaagctagggataattttaagcaaatgttagaagaatgcagagagctgacatct
tcttcaagatggagcaaagtagtgacattgtttgaagaagatgaacgtttcaaagctatt
gaaagagacaaagaccggaaggatatatttgagagcttcatagttgagctggaaaagaag
gagagggagagatctttggaggagcggaagaaaaatatgagggaatacaggcagttcttg
gagtcttgcgattttattaaggcaagcagtcagtggcgcaaactacaagatcgcttggag
gctgatgagagatgttcacgcctggaaaagatggatcggttagagatattccaggattat
ctgcatgatctagagaaagaagaggaggagcagaggaagatacagaaggaggaaatgaga
aaggcagaacgcaaaaaccgtgatgaattccgcaaattgatggaagaacatgttgctgct
ggcactcttactgctaagactctttggcgtgattactacatgatggttaaagatttgcca
gcatatatggcagttgcgtcaaatacggcaggttcaacgccaaaagatttgtttgaagat
gttgccgaggaactacagaaacagtatgaggaggataaatctcaagtagatgatgcagta
aaaattagaaagatctccttaacatcaacctggactgttgaaggcctgaaagcatccatt
gcagatgatattcgtggcacacccatatcagatattaattttaaattagtgttcgatgac
ttgctggaaagagcccggaagaaagaagagagagttgttaaaaagcgtaaacgactgggt
gataagttcttcgatttacttaccactataagggaaataactccatcttcaacatgggat
gagtgcaaacaattggttgaaaatagtcatgagtacagttcaattggtgatgatatatat
tgtcaggacatttttgaagagtacataacaaaattgaaggatcacgaaacaagaaaacac
aaggaggaaaaggcagaaagggaaaagaagaagcggggaaaagaagggaaaagagggaaa
gataggagagaaaaagataggtatgatagagaggaggaggaatcgagggacaatggagca
gacagtgaccgagaaattttgtctgagactcgtgcatcttataagaagaaaaaatcaggt
gaagatcgtgaaagaaagcgacacaggcatattcatagaacatcagattgtatggacatt
gctgaggcagagcattctgaaaaatatcacagacacaatggtgaccataagaaggccaca
cagcatgaatccactccagagtctgacagtgaaagccgccataggagacacaagagagat
cgcagaaatggttctcacagaagtggtgggtatgaggaggaacttgaagatggggaattt
ggcgaagatgtaaaaaagtag
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integrated database retrieval system