Eucalyptus grandis (rose gum): 104453658
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Entry
104453658 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II
KO
K13148
integrator complex subunit 11 [EC:3.1.27.-]
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104453658
Spliceosome [BR:
egr03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
104453658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
RMMBL
zf-RING_2
Lactamase_B
zf-RING_11
zf-rbx1
Lactamase_B_2
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-C3HC4_3
zf-RING_UBOX
Anti-Pycsar_Apyc1
zf-RING_5
FANCL_C
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
104453658
NCBI-ProteinID:
XP_010066571
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All DBs
Position
7:44732218..44749241
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AA seq
975 aa
AA seq
DB search
MAIDCLVLGAGQEVGKSCAVVTIGGKRIMFDCGMHMGYLDRRRYPDFSRVAPDGDFTGAL
DCIVITHFHLDHVGALPYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVERRGEEEQF
TAEHIAACMKKVIAVDLKQTVQVDSELQIRAYYAGHVIGAAMFYAKVGDSALVYTGDYNM
TPDRHLGAAQIDRLHLDLLITESTYATTVRDSKYTREREFLMAVHKCVAGGGKVLIPTFA
LGRAQELCMLLDDYWERMNLNVPIYFSAGLTIQANMYYKMLINWTSQKVKETYVTRNPFD
FKNVRNFDRSMINSPGPCVLFATPGMISGGFSLEVFKNWAPSEINLVTLPGYCVAGTIGH
KLMSGKPTKIDLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKM
ASLKGKIESELGIPCYDPANNENVSVPSTHFVKACASDAFVRSSLSPNFKFSRRIGEYGF
SHSGDTEVRPYLQVRDERVAEGIVVIEGNKAAKVIHQDELPNFLRKERHEVKFAYCFPAH
SSKKNEEPDHNFTDSLQCSSRQCSLLRALLCELSKEFRQEEIQDFREYIKVESLHYPAAT
MSASSSSAANSSSAAAAAAGSDQQAPLLASRQGSGADDGGSGSSDSGPRPPSLAVLLGRA
AGRRGPXMLVRETAARELEQRRADWGYSRPVVALDIMWNTAFVLVSVVMLVVTADEHPNT
PIRLWICGYAAQCLVHVVLVWIEYRRRSARRVRDEERQQNYNYVNDSEDEEAGVDAALGS
TAQSNVTKRCESINTMASFLWWIVGFYWVVSGGDILLAEAPRLYWLAVVFLAFDVFFAIF
CVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYKFHILSNGEKTVVGAGK
MVPVETTSGYLANDRLLLPEDAECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNAT
CPLCKYNILKGNEQI
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgactgcctcgtcctcggcgcgggtcaggaggtcgggaagagctgcgcggtg
gtgacgatcggcggcaagaggatcatgttcgactgcggcatgcacatggggtacctcgac
cgccgccgctacccggacttctcgcgcgtcgctccggacggcgacttcaccggcgctctc
gattgcatcgtcatcactcactttcatctggatcacgtcggggctcttccttacttcacc
gaagtctgcggctatcgcggacccatctacatgacgtatcctactaaggcattggctccc
ttgatgctggaagattatcgcaaagtgatggtggaaaggagaggtgaagaagaacaattt
actgcagagcatattgcggcctgcatgaagaaagtgatagctgtggacctcaagcaaact
gtgcaggttgacagcgagctccaaattcgtgcgtactatgctgggcatgtcataggagct
gccatgttctatgcaaaggtgggagattctgctttggtttacacaggagactataacatg
acacctgatagacatcttggagctgctcaaatcgaccgactacatctggaccttttaatc
acagagtcaacatatgcaacgacagtgcgggattccaaatatactcgtgaaagggagttc
ctcatggctgtccataaatgtgttgctggaggaggaaaggtgctcattccaacatttgcc
cttggaagagctcaggaactctgtatgttgctggatgactactgggagcgtatgaatctg
aatgttcctatatacttttcggcaggtctgacaattcaagccaacatgtactataaaatg
cttatcaattggactagccaaaaggtcaaagagacatatgtaacacgcaatccgtttgac
ttcaaaaatgttcgcaattttgaccgttccatgattaattctcctggaccctgtgtgctt
ttcgcaacacctgggatgatcagtggtggattttctctagaagttttcaagaactgggca
ccttctgaaatcaatcttgttacgctgcctgggtattgcgtggctggaaccataggacat
aaattgatgtctgggaaacccactaaaattgacttggataaggacacgcagattgatgtt
cgatgtcagattcatcaattatccttcagtccccacacagatgcaaaagggataatggat
cttgttaaatttctttcaccgaagcatgtaatactcgtgcatggggagaagcctaaaatg
gcttctctgaaggggaaaatcgagtctgaattaggaattccatgttatgaccctgcaaat
aacgagaatgtgagtgttccatcgactcactttgtcaaagcatgtgcatcggatgcattt
gtgcggagttcattgagcccgaacttcaagttctccagaaggatcggggaatatggattt
tcacattcaggagacactgaagtgaggccatatttgcaagtaagggatgaaagggtagct
gaaggaattgtcgtgatcgaaggcaacaaagcagctaaagttatccaccaagatgagctt
ccaaactttctaaggaaagaaaggcatgaagtaaagtttgcttactgtttccctgcacat
tcgagcaagaaaaatgaagagccagatcataatttcacggacagtttacagtgctcttca
aggcaatgttctttacttcgggctttactctgcgaactctcaaaagaatttcgtcaagag
gaaatccaagatttcagggaatacattaaggtggagtcgcttcattacccggccgccacc
atgtccgcctcctcctcttccgccgccaattcctcctccgccgcggcggccgcggcgggc
tccgaccagcaggccccgctcctcgcctcccgccagggcagcggcgccgacgacggcggc
tccggctcctccgactccgggccccgcccgccctccctcgcggtcctcctcggccgggcc
gcgggccgccgcggccctnccatgctggtccgggagacggcggcgcgggagctcgagcag
cggcgcgccgactgggggtactcgcggcccgtggtcgcgctggacatcatgtggaacacg
gcgttcgtgctggtgtccgtggtcatgctcgtcgtcaccgcggacgagcaccccaacacc
ccgatccggctctggatctgcgggtacgccgcgcagtgcctggtccacgtggtcctcgtg
tggattgagtaccggcggcgcagcgcgcggagggtccgggacgaggagcggcagcagaac
tacaattacgtgaacgacagcgaggacgaggaagccggcgtggacgcggctttgggcagc
acggctcagtcgaatgtcaccaaacgctgtgaatcaattaataccatggcctcatttctg
tggtggatagttggcttttactgggtagtttctggtggagatattcttttagctgaagcg
cctcgtctctactggttggctgtggtatttctggcatttgacgtattctttgccatcttt
tgtgttgttttggcatgtctgattgggattgctctttgttgctgtctaccatgcattatt
gcaattctttatgctgttgctggacaggagggtgcatcagaggccgatctcagtatcctt
cctaaatacaagtttcatatattgagcaatggtgaaaaaactgttgttggagctggaaag
atggttcctgttgaaacaactagcggatatcttgcaaatgacagattgcttctgcctgag
gatgcggagtgctgtatatgtctcacctcgtatgaggatggagcagagctccatgctctc
ccctgcaaccaccatttccattcgacatgtattgtgaaatggctcaagatgaatgcaacc
tgtcctctctgcaagtacaacattctcaaaggaaatgagcagatataa
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