Eucalyptus grandis (rose gum): 104453748
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Entry
104453748 CDS
T03547
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104453748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104453748
03012 Translation factors [BR:
egr03012
]
104453748
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104453748
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104453748
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104453748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
Dicer_dimer
ABC_tran
NACHT
NV_polyhedrin
AAA_23
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104453748
NCBI-ProteinID:
XP_010066673
LinkDB
All DBs
Position
6:complement(47005457..47021196)
Genome browser
AA seq
1055 aa
AA seq
DB search
MLLCNKEKQELVSKDKKDRRDFEQIAALARKMGLYSQVYAKAVVFSKVPLPNYRFDLDEK
RPQREVSLPLGLLRRAEGYLGEYFSQKPRYTESSSYNSFSRCSSSSSIATEEGLFEQPEP
LASSKYMIEKVLARRSLQLHEKQQAWQESPQGRKMLEFRRNLPAYKEKDVLLTAISQNQV
VIISGETGCGKTTQIPQFILESEINSGRGALCNIICTQPRRISAMSVSERVASERGEILG
DSVGYKVRLEGMKGKDTRLLFCTTGILLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLI
VLKDLLPRRSELRLILMSATLDAETFSSYFGGAPIIRIPGFTYPVRTHFLENILETTGYR
LTPYNQIDDYGQDKMWKMSKQAPRKRKSQIASVVEEALGAADLKDYSPQTRESLSCWNPD
CIGFNLIEYLLCHICENEKPGAVLVFMTGWDDISSLKEKLQSHRILGDPNRVLLLACHSS
MASSEQRLIFDEPADGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLL
PSWISRVSAKQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPEILRTPLQSLCLQIKSLK
LGSISEFLSRALQSPELLAVQNAIEYLKTIGSLDENENLTVLGRYLSMLPMEPKLGKMLI
LGAVLNCLDPILTVVAGLSVRDPFLTPMDKKDLADAAKAQFSRDYSDHLAIVRAYEGWND
AEVDYAGYEYCWKNFLSAQSMKAIDALRRDFFSLLRDTGLVDGNTATSNQWSHDEHLIRA
VICYGLYPGVSSVVHNEKSFSLKTMEDGQVLLYSNSVNARDSQIPYPWVVFNEKIKVKSV
FLRDSTAVSDSMLLLFGGSFSRGDMDGHIKMLRGYLEFFMSPAIANMYASIKRELDELIQ
MKLHNPRMDIHSHHELLSAVRLLLAEDKGYGKFVFGRQILMPSNTTQTQVQPTTVSRIDS
GPGGDNSKSQLQTLLTRAGYAAPTYKTKQLKNNQFRATVELNGMQIMGQPSTNKKSAEKD
AAAEALQWLMGGTQPGSGYINHMSMLLKKSKKDHH
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgtgcaataaagaaaagcaagaattggtctcaaaggacaaaaaggacaggcgt
gattttgagcaaatagcagctctggcgagaaagatgggtttgtatagccaagtctatgca
aaagcggttgtattcagcaaggttcctctgcctaactatagatttgatctggatgagaag
cgtccgcagagggaggtgagcttacctcttggtctgctaagaagagctgagggatatcta
ggggagtacttttctcagaagcctagatatactgaaagctcttcatataattccttttca
agatgcagtagtagcagtagtattgctactgaagaagggctttttgaacaaccagagcca
ctggcgtccagtaagtacatgatagagaaagttcttgctcggagaagtttgcaactccac
gagaagcagcaagcttggcaggaatctccacaaggaagaaaaatgctggaatttcgtaga
aatctacctgcctataaggagaaggatgtattattaacagccatttcgcaaaatcaggtt
gttatcatctcaggtgaaactggctgtggcaagactacacagattccccaatttattttg
gaatcagagataaattctggacgtggagcactttgtaacatcatatgcacacaaccaaga
agaatatcggccatgtctgtttctgaaagagttgcttcagaaagaggagaaatattgggt
gattctgttggatacaaggttcggttagagggtatgaagggcaaggatacacgccttctc
ttttgcaccacaggcattttgttgaggaggttgctggtcgatagaagcttgaaaggtgta
actcatgttattgttgatgagattcatgaacgtggaatgaatgaagattttctgcttatt
gtccttaaagatctacttcctcgtcggtcagaactgaggttgattttgatgagtgctacc
ttggatgcggaaactttctcgtcctattttggtggagctccaataattcgcattccgggt
tttacatacccagttcggactcattttctggagaatatactagaaacgacgggctacagg
ttgactccttacaatcagatagatgactatggtcaagacaagatgtggaaaatgagcaaa
caggctcctagaaagagaaagagtcaaattgcctctgttgttgaggaagcacttggagct
gcagatttgaaggattatagcccccagactagagaatctctctcgtgttggaatcccgac
tgtattggctttaatcttatagaatatctgctgtgccacatatgtgagaacgaaaaaccg
ggtgctgtgctggtctttatgacaggatgggatgacataagttcactgaaggaaaaactc
caaagtcatcgaatattgggagatcctaatcgagttttattgcttgcatgccatagttca
atggccagttcagagcagaggttaatatttgatgaaccagcagatggtgtgaggaaaata
gtgctagcaaccaatattgctgagacaagtattacaattaatgatgttgttttcgttctc
gactgtggaaaggctaaagagacctcatatgatgcactgaataacactccttgcttgctt
ccttcctggatttctagagtttctgcgaaacagcgaagaggaagagcaggtcgagttcaa
cctggagaatgttaccatctctatcctaaatgtgtatatgaggccttttcagagtatcag
ttgccagaaattttgagaacgcccttacagtcgctttgtttgcaaataaaaagtttaaaa
cttggcagtatttctgagtttctgtcaagggctttgcagtccccagagttgctagcggtt
caaaatgctattgagtacttgaaaactattgggtctctggatgagaatgagaatttgacc
gtactaggccgttacctttctatgcttccaatggagcctaaacttgggaagatgctcata
ttgggtgctgtcctaaattgcctggatccgatacttactgttgttgctggcctcagcgtg
agagatcctttcctaacaccgatggacaagaaggatttggcagacgctgcaaaagcacag
ttttctcgtgactacagcgatcatcttgcgattgtccgagcctatgaggggtggaatgat
gctgaagtggattatgctggatatgagtattgttggaaaaattttctgtcagcacagtcc
atgaaagctattgatgctcttcggagggacttcttctctttgcttagggacactggcctt
gttgatggaaacacagccaccagcaaccaatggagccatgacgaacatctcatccgtgct
gttatatgttatggcctgtaccctggtgtttcttctgttgtgcacaatgaaaagtcgttc
tccctaaaaactatggaagatggccaggtgcttctgtattcgaactctgtcaatgctcgg
gattcccaaatcccttatccatgggtagtcttcaatgaaaagattaaagtgaaatctgtt
ttcctccgtgattcaacagctgtgtcagattcaatgcttctcctatttggtggaagtttc
tctaggggggatatggatgggcacataaagatgttacgaggatatctggaattttttatg
agtcctgcaatcgcaaacatgtacgcaagcattaaaagagaacttgatgaactgattcaa
atgaagctacataatcccaggatggatatacactcccatcacgagctcctatctgctgta
aggctgctgcttgcagaggataaaggctatggtaaattcgtttttggccgtcagattttg
atgccttcaaacacgacccagacacaagtgcagccaaccacagtctcacgcatcgatagt
ggccctggtggtgataattcgaaaagtcagctgcaaacactgctcacaagggcaggatat
gctgccccgacctataagacaaagcaattgaagaacaatcagtttcgagcaacagttgaa
ttaaatggtatgcagatcatgggtcagccatccaccaataagaagagtgcagagaaggat
gcagctgccgaggctctgcagtggctgatgggtggtactcaaccgggttctggatacatt
aatcatatgtcaatgctactgaagaaaagcaagaaggaccaccattag
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