Eucalyptus grandis (rose gum): 104454062
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Entry
104454062 CDS
T03547
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104454062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104454062
03012 Translation factors [BR:
egr03012
]
104454062
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104454062
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104454062
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104454062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
ABC_tran
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104454062
NCBI-ProteinID:
XP_010067085
UniProt:
A0A059BFZ4
LinkDB
All DBs
Position
7:complement(51205150..51214821)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPSIMLRCALLGRAAKPTPRRASVDGRSWACSSLFGLFSEAALCEGRSLAARRWFCGYAA
EQFSDDEYEVDFEGHKASSSVANIDEWKWKLSLLSRSEKDQEIVSRDKRDRRDFEQISNL
AKRMGLYSEVYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQEHLDRIQ
LRVGKEGDEASVVKSADQVEEINPDDNPELFLDGSVMERVLQRRSLRMRNMQRAWQESPE
GRKMLDFRKSLPAFREKDRLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAF
CSIICTQPRRISAMAVAERVSAERGQPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRL
LSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELFSTYFG
GAPTIHIPGFTHPVRAHFLEDVLEITGYKMTSFNQIDDYGQEKLWKTQRQLAPRKKKNQI
TALVEDVLTKSSFENYSSRVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGAVLVFMTGW
DDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRQIFEAPPFNVRKIILATNMAEAS
ITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASAKQRRGRAGRVQPGECYHLYPR
CVYEAFAEYQLPELLRTPLNSLCLQIKSLQVASIGEFLSSALQPPEPLTVQNAVDFLKMI
GALDEKENLTNLGKFLSVLPVDPKLGKMLIMGAILRCFDPILTIVSALSVRDPFLLPQDK
KELAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSPQTLQAIHSLRK
QFSFILKDAGLVEADSSTNNKLSHNQSLVRAIICCGLFPGIASVVHRETSMSFKTMDDGQ
VLLYANSVNANYSTIPYPWLVFGEKIKVNTVFLRDSTGVSDSILMLFGGALSLGVQAGHL
KMLEGYVDFFMDPSLGECYVKLKEELDKLLQKKLQDPRMDIHKEGKYLMLAVQELVSGDQ
CEGRFVFGRESRKPKEPSDANKFTRDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRA
LVEFKGMQFVGKPRKNKQLAEREAAIEALAWLTHTSDETRDEDDKSPLDVTDNMLKLLGR
RRRSKRHPR
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctagcatcatgctaagatgcgctctcctgggacgcgccgccaagcccacgccacgc
cgcgcttccgtcgacgggcggagctgggcctgcagctccctgttcggcctgttctctgag
gcggcgctctgcgaagggaggtctcttgccgcgaggcggtggttctgcggttacgccgcg
gagcagttctcggacgatgagtacgaagtcgacttcgagggccacaaggcgtcgtcttcg
gttgcgaacatcgatgaatggaagtggaagctcagcttgctctcgcgcagcgaaaaggac
caggaaattgtatctcgagataaaagggatagaagagactttgagcagatttctaatctg
gcaaaaaggatggggctttacagcgaagtatatggaaaagtagtggtcgcgagcaaggtt
cctctcccaaactaccggccagatcttgatgataagcgacctcaaagagaggtggttatc
cctctaggcctgcaaaggagagttgagggcttgcttcaggaacatcttgataggatccaa
ttacgagttggtaaagaaggcgacgaggcaagtgttgttaagtcagctgatcaagttgaa
gagatcaatccagatgacaatccagagttatttcttgatggttctgtcatggaaagggta
cttcaaaggagaagcttgcggatgcgtaacatgcaaagagcttggcaggagtcaccggag
ggcaggaaaatgctggactttcggaaatccttacctgcattcagggagaaggataggctg
ctccaggcgatagcgaggaatcaggtcattgtaatatctggggagactggatgtggcaag
accactcagcttcctcaatatatcctagagtcggaaatagaatctggtaggggagcattt
tgcagcataatttgcactcagcctagacgaatatctgctatggcagttgccgaaagagtg
tctgctgagagaggacagcctcttggtgaaacagttggctataaagttcggctagaaggg
atgaagggaaaaaatacacatctgctcttctgtaccagtggaattctgctacgacgattg
ctgagtgatcggaacctgaatggtataacccatgtatttgtagacgaaattcacgagaga
ggcatgaatgaagacttcctcttgattgtcctaaaggatcttcttcctcgccgtcaagat
ttgagattaatattgatgagtgccacattgaatgcggagttattctccacctattttgga
ggtgccccaactattcatataccgggattcacacaccccgtgagagctcattttttagaa
gatgtactggaaattactggatacaagatgacctcattcaatcaaatagatgattatggt
caagagaaattgtggaaaacgcagagacagctagcaccacggaagaagaaaaaccagatt
actgctcttgttgaggatgttcttactaaatcaagttttgaaaattatagctctagagtg
cgagattctttatcatgttggacacctgactgcatgggattcaatcttattgaggcagtg
ttatgccacatatgtcgaaaagaaagaccaggtgctgtactagttttcatgactggatgg
gatgatataagttgcttaagggatcaactcaaagctcatcctcttctgggagaccctaac
agggttctgctcttaacatgtcatggttcaatggcaacatctgaacagagacaaatattt
gaggcaccgccattcaacgtgcgtaaaataattcttgccaccaatatggccgaagcaagt
attacaatcaatgacatagtatttgttgttgattgtggaaaagcaaaggagaccacttat
gatgcattgaataacacaccgtgtctactaccttcttggatatcacaagcatcggccaaa
cagagaaggggtagagcaggccgtgtacagccaggcgaatgttaccacttatatccccgc
tgtgtttatgaagcatttgctgagtatcaacttccggaacttttgagaactcctttgaac
tctctttgcctgcaaataaaaagcttgcaggttgccagtataggggaattcctatcatct
gcactacagccaccagaaccacttactgtccaaaatgctgttgactttttgaaaatgatt
ggggcattggatgagaaggaaaatcttacaaatcttgggaaatttttgtcagttcttcca
gttgatccaaagctgggaaaaatgctcattatgggtgccattttgcgttgctttgatcct
attcttaccatagtatcagcactcagtgtgagagatcctttccttttgcctcaagacaaa
aaggagttagcagggacagcaaaatcaaggttctctgcaaaggactacagtgaccacatg
gctcttgttcgtgcatatgagggatggaaagatgcagagagagaaggttcagcttatgag
tactgctggaggaatttcctctctccccaaactctgcaagctatccattctcttaggaag
cagttcagtttcatattaaaagatgctggcttggtagaagctgattcaagtactaataat
aaattaagccacaatcaatcacttgtccgtgcaatcatttgctgtggcctttttcctggt
attgcgtctgtagttcacagggaaacatccatgtcgttcaaaacgatggatgatggccag
gtgctactttatgcgaactctgtcaatgcgaactactcgacaattccttatccctggcta
gtgtttggagaaaagattaaagtgaatactgtcttcttacgggattcaactggtgtatct
gattcaatattgatgctatttggtggtgctcttagccttggagtacaggctgggcatctg
aaaatgctggaagggtatgttgactttttcatggatccaagtttgggagaatgctatgtg
aagcttaaggaggagcttgataagctgcttcaaaagaagcttcaggatccccgcatggac
attcacaaggaaggaaaatatcttatgcttgctgtccaagagctcgtttctggggaccaa
tgtgaagggagatttgtgtttggccgagaaagcagaaagcccaaggaaccttcggatgcc
aacaaattcacaagagacggaacaaatcccaagagcttgctccaaactctgctgatgaga
gcggggcactctcctccaaaatacaaaacaaagcacctgaagacgaacgagtttagggcg
ctcgtagagttcaagggaatgcaatttgtcgggaagcccaggaaaaataagcagctggcg
gagagggaggctgctatagaagcattagcgtggttaactcacacttcagacgaaacccgt
gatgaagatgacaaatccccacttgatgtcacagataacatgctgaaactcctcggcaga
cggagaagatcaaagagacaccctcgttga
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