Eucalyptus grandis (rose gum): 104454177
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Entry
104454177 CDS
T03547
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03013
Nucleocytoplasmic transport
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104454177
03015 mRNA surveillance pathway
104454177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104454177
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104454177
mRNA cycle factors
P-body specific factors
104454177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
104454177
NCBI-ProteinID:
XP_010067250
UniProt:
A0A059BHI9
LinkDB
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Position
7:complement(53787242..53800483)
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AA seq
1198 aa
AA seq
DB search
MDSNEGESRSGGEQHGKQDDEENVARQEELKKSIDAKMALRQSNLNPERPDSSFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKIFFPGKSADDSDADRNLKAMKKRSTLKLLLELYFVGVIED
GGIFINIIKDLTSLEHLRDRDTTQSNLALLASFARQGRIFLGLPLTGQEIYEEFYKGLNI
TAEQKKIFRKAVHAYYESAGELLQSEHAALRQMEHENAKILNAKGELSDENVSSYEKLRK
SYDHLYRNISSLAESLDMQPPVMPEDGHTTRMTSGEDASSPAAKDSSTAEALWDDEDTRA
FYECLPDLRAFVPAVLLGEVEPKVNEQSTKTQDQPTESATDPERGQVIAEERLEISVEPG
SSQEGKVFEKGKDKEEKDKEEKDKEKTKDMDKEKGKEKEVEKKVESEKEKVKGLEGTSLD
ALLQRLPGCVGRDLIDQLTVEFCYVNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLS
TCMKDVSAMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKA
CLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVEN
AYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEAYLLKC
FMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIHLGLELNDYGMQQRRVAHM
RFLGELYNYEHVDSSVIFETLHLILVFGHGTTEQDVLDPPEDCFRIRLVITLLQTCGHYF
DRGSSKRKLDRFLMHFQRYILGKGGLPLDVEFDLQDLFADLRPNMTRYSSIEEVNAALLE
LEEHERTAFSEKASSEKHSDAEKVAGKSKHANSANGRNIENGGEENGEVHEDIADSDTDS
GSGSMDAGRDEEELDDDNPDDGCDSDDDEDEDDDARGSASDEDEVHVRQKVTEVDPLEEA
NFEEELKAVLQESLEQRRLELRGRPTINMMIPMSVFEGSTKDHHGRGLGGESGDEAVDEE
GGARKEVQVKVLVKRGNKQQTKQMYIPRDSSLVQSTKQKEAAELEEKQDIKRLVLEYNDR
EEEELNGLGNQSLNWSQSGAGRVISRGNNWEAGGGRTVGTRHRHLNYPGGGGYYSRKR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggatagtaacgaaggagagagccgttccggcggcgagcaacacggcaagcaggatgat
gaggaaaatgttgctcgtcaagaggagctcaagaagtcgatcgacgcgaaaatggctctt
cgtcagagcaacctgaatcccgaaaggcctgactcaagcttcctgaggacactagattct
agcatcaagcgcaatacagcggtgataaaaaagctaaaacagataaatgaagagcagcga
gaagggctgatggatgagttgcgtggagtcaatcttagtaaatttgttagtgaagcggtg
acagccatatgtgatgccaaactcaggagttccgacatacaagcagcagttcagatatgc
tcattgcttcatcaaagatacaaagacttctctccaagcttgatccaaggactcttgaaa
atattctttcctggaaaatctgcggatgactcagatgcagatagaaacttgaaggccatg
aaaaagcgcagcactctcaagttgcttttggagctttactttgttggagttatagaagat
ggtgggatcttcataaatatcatcaaggatctgacaagcttagagcacttgagggatcgg
gataccactcagtcgaatttggctctgcttgctagttttgctcggcaaggaaggattttt
ttgggtcttccacttactggacaagaaatttatgaagagttctataagggcctcaacata
acagcagagcaaaagaaaatcttcaggaaggcagttcatgcatattatgaatctgccggt
gaattacttcagtctgagcatgcggcacttaggcaaatggagcatgaaaatgcaaagatc
ttgaatgcaaaaggagaacttagtgacgagaatgtttcttcctatgaaaagctacggaaa
tcttacgaccatttatatcgcaacatatcctctttggcagaatctcttgatatgcagcct
ccagtgatgcctgaggatggccacacaacaaggatgaccagtggagaggatgcttcttct
cctgctgcgaaagattcctctacagcagaagcattgtgggatgatgaagatacaagggct
ttctatgagtgccttcctgaccttagagcattcgttccggcagtattacttggggaagtt
gagcctaaagtgaatgagcaatctacaaagacacaagatcaaccaactgaatcagcaact
gatcctgaacgaggtcaagtaattgctgaggaaagattggagatatctgttgaaccaggc
tcctcacaggagggaaaagtttttgagaaagggaaggacaaggaagagaaggataaagaa
gaaaaggataaagaaaagacaaaagatatggataaagagaaaggcaaagaaaaagaagtg
gagaaaaaagtggaaagtgagaaggagaaagtcaaaggactggaaggaactagtttggat
gccctattgcaaaggcttcctggttgtgtgggtcgggaccttattgatcaattaacggtg
gagttttgttatgtaaattcaaagtctaatcgtaaaaggcttgtgagggcgctttttaat
gtccccaggacctcactggaactgcttccctattattcacggatggttgccacactgtct
acttgcatgaaggatgtatctgctatgctgcttcagatgttggaggaggagtttaatttc
ctcattaataaaaaggaccaaatgaatatagaaactaaaatcagaaatattagatttatt
ggagaactctgcaagttcaggattgctcctgctggccttgttttcagttgtttgaaggct
tgtctagatgatttcactcaccataacattgatgttgcgtgtaatctcctcgagacatgt
ggtcgttttctgtatcggtctcctgaaactactgttcgcatggctaacatgttggaaatt
ttaatgcgcttgaaaaatgtaaagaacctggatcctcgacatagcacccttgtagaaaat
gcttattacctctgcaaaccacctgaaaggtctgcacgagtagcaaaagttagaccacca
ttgcatcagtacatcaggaaattgcttttctctgacctggacaaatcttccattgagcat
gtgctgagacaacttcgtaaattaccatggagtgaatgtgaagcatacctgttaaaatgc
tttatgaaggttcatagaggaaaatatggtcagattcacttgattgcttctctgactgct
ggtttaagccgctatcatgatgaatttgccgtggccgttgttgatgaggttttggaagag
atccatcttggacttgagttgaatgattatggaatgcaacagaggcgggttgcgcatatg
cgcttcttaggagagctttacaactatgaacatgtagattcatctgttatattcgagact
cttcatttgattcttgtttttggccatggcacaacggagcaagatgtattagatccacca
gaagactgttttcgcattaggctggtcattacacttcttcagacctgtggccattacttt
gaccgtggctcttccaagaggaaacttgatcgtttcctgatgcatttccagaggtacatt
ttgggcaaaggtggattaccattggatgttgaatttgacttacaggatttgtttgcggat
ttgcgtcccaacatgactcgatattcgtccattgaagaagttaatgctgcactgttagaa
cttgaggagcatgagcgtactgccttcagtgagaaagccagcagtgagaagcactctgat
gcagaaaaggtggcagggaaaagtaaacacgcaaactcagccaatggccgaaatattgaa
aatggcggggaggaaaatggcgaggtgcacgaggatatcgctgacagcgacactgattca
ggtagcggctccatggacgcaggacgagatgaagaggagctggatgatgataatcctgat
gatggatgcgatagtgacgatgatgaagacgaggatgatgatgcacgtggatctgcttcg
gatgaggatgaagtccatgtgagacagaaggtaacggaggtggaccccttggaagaagcc
aattttgaggaggaactcaaggcagttttgcaggagagcctggagcaacgccgactagaa
ctccgaggtcggcccactataaacatgatgataccaatgagtgtatttgaggggtccacc
aaagatcatcatggaagagggcttgggggagagagcggtgatgaggccgtggatgaggag
ggtggagcacgcaaggaggtccaagtcaaagttcttgtgaagcgagggaacaagcaacaa
acgaagcagatgtatattcctcgggactcttctctagtgcagagcaccaaacagaaggaa
gcagctgaacttgaagagaagcaagacattaagaggctggttttggagtacaatgacagg
gaagaagaggagcttaatgggctagggaaccagtctttgaattggtctcagagtggtgct
ggcagagtgattagtcggggtaacaattgggaagctggtggtgggagaacagttgggacc
cgtcaccgtcatttaaattatcctggaggcgggggttactatagtaggaagagatga
DBGET
integrated database retrieval system
