Eucalyptus grandis (rose gum): 108954036
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Entry
108954036 CDS
T03547
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03013
Nucleocytoplasmic transport
egr03015
mRNA surveillance pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108954036
09122 Translation
03013 Nucleocytoplasmic transport
108954036
03015 mRNA surveillance pathway
108954036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
108954036
03041 Spliceosome [BR:
egr03041
]
108954036
03009 Ribosome biogenesis [BR:
egr03009
]
108954036
03012 Translation factors [BR:
egr03012
]
108954036
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108954036
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108954036
mRNA cycle factors
Stress granule specific factors
108954036
Spliceosome [BR:
egr03041
]
Complex C
Other components
EJC/TREX
108954036
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
90S particles
Helicases
108954036
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
eIF-4
108954036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
Helicase_RecD
AAA_19
SH3_12
Motif
Other DBs
NCBI-GeneID:
108954036
NCBI-ProteinID:
XP_039168635
LinkDB
All DBs
Position
5:11596695..11600267
Genome browser
AA seq
406 aa
AA seq
DB search
MATSSMARPVPATRSRPPAAAAFETAPGVEAVSSFDSMGLGDDVLRGIYGHGFDKPSAIQ
QRAVVPIVRGRDVIAQAQSGTGKTSTFALASCQIVDTSRRDVQVLILSPTRDLVSQTERV
VLAIGYYRNVLAHACVGGKSMGEDIRKLEHGVHVVSGTPGRVLDMIKRRTLRTRAIKLLV
LDEADELLSRGFKDQIYDVYRFLPPEIQVVLVSATLPTEILEMTGRFMTDPIRIVVKRDE
LMLERVDQYMVPVEREDWKFDTLCDLYDNCPISQGVVFCNTKRKVEWLAEKMRDSNFTVS
FMHGDMPQKERDAVMAGFRSGATRLMITTDVWARGIDVEQVCLVVNYDLPNSRELYVHRA
GRVGRFGRKGVVVNFVKDKEIQILRDIEQYYGTNICECPEDPADII
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcctcgatggcaaggccagttccggcgacccgatcgcgcccgccggcggcg
gcggcattcgagacggcgccaggcgtggaggccgtgtcgagcttcgacagcatgggcctg
ggcgacgatgtcctccgtgggatctacggccacgggttcgacaagccctcggcgattcaa
cagcgagccgtggtccccattgtccgaggccgagacgtgatcgctcaggcgcaatccggc
acgggcaagacctccacctttgctctcgcgtcttgccagatcgtggacacctccagaaga
gatgtgcaagtgctgattttgtcacctacgagggatttggtgagtcagacggagagagtt
gtgctggctattggttattacaggaacgtgctagcccatgcatgcgttggaggcaagagc
atgggtgaagatatccggaaattggagcacggagttcatgttgtgtccggaactccgggc
agggtgcttgacatgataaagaggagaactcttcgcaccagagccatcaaactcctagtc
cttgatgaagctgatgagttgctgagccgaggatttaaggatcaaatctacgatgtttac
agattccttcctccggagattcaggttgtcttagtttcagcgaccctccccactgagata
ttagagatgacaggaagattcatgaccgatcccataaggattgttgtgaagcgcgatgag
ttgatgctggagcgcgtcgaccagtacatggtgccagtggaaagagaagactggaaattt
gacactctgtgcgatctatacgacaactgccccataagccaaggagttgtattctgcaac
actaagcggaaggtggagtggcttgcagaaaagatgcgtgattctaacttcactgtgtct
ttcatgcacggggacatgcctcaaaaggagagagatgcagtaatggctggatttcgatct
ggggcgactcggttgatgatcaccaccgatgtgtgggctcgagggattgatgttgagcag
gtttgtctcgttgtcaactatgatcttcccaacagcagagagctgtacgtccatcgggcc
ggtcgagtaggccgttttgggcggaagggtgttgtggtaaattttgtcaaagacaaggag
atccagattcttagagacatagagcagtattatggcaccaacatatgcgaatgtccggag
gaccctgccgatataatatga
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