Eucalyptus grandis (rose gum): 120286344
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Entry
120286344 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120286344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
120286344
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120286344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
120286344
NCBI-ProteinID:
XP_039163855
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All DBs
Position
3:complement(71393037..71399038)
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AA seq
662 aa
AA seq
DB search
MPRKFSHGLDYDDEDYDDDYDYDDDVDYDAEDNGNSPKPNQETTRSAVWRCSICTYDNDQ
SMTACDICGVLRNPLLSVISNGNDLKTVPFKFDVPSPDDVVTNGLHSSKRGLKASATVRK
DNTSAPMTTRSSNSSSFMMSKGRNVTGNENNRVKDEERNLRSSAKSPGTSSSYHEGGVEY
TLPTDGIKPQSLVRSLDSVSINDRGGTGKGASQGQYKPEKWMLPEAEDGLLSQLNLAIVG
HVDSGKSTLSGRLLHLLGRISQKQMHKHEKEAKLEGKGSFAYAWALDESPEERERGITMT
VAVAYFDTKXYRVVVLDSPGHKDFVPNMISGATQADAALLVIDASIGSFEVGMDGSKGQT
KEHAQLIRSFGVDQLIVAVNKMDVVEYSKDRFDLIKQQLGTFLRSSGFRDSSVCWIPLSA
MENQNLVTAPSDVRLLSWYKGPYLLDAIDSLQPLTRDVLKPLVMPICDVIKSPSMGQVSA
CGKLEAGALRSGVKVLVMPSGDVGTVKSLERDSRPCAIARAGDNVAVVLQGIDTSKVISG
XVLCHPDFPISIATHLELKVLVLDGASPILIGSQLEFHIHHAKEAARVEKMVSLLDPKTG
KVMKKAPRCLLAKQKAVIEVVLQGPVCAEEFSSCKALGRVSLRALGRTIAVGIVTQVIEK
EP
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaatttagtcacggccttgattatgatgatgaagactacgatgatgactac
gactacgacgacgatgttgattatgatgcagaagataatggcaattcacctaagccaaat
caagagaccaccaggtctgctgtttggcgttgctccatttgtacctacgataatgaccag
agcatgaccgcatgtgatatttgtggggttcttcgaaatcctttgttgagtgtcatcagc
aatggcaatgacctgaaaacagtgccttttaagtttgacgtcccatccccagatgatgta
gtcactaatggattgcactcctccaaaaggggtctgaaagcaagtgcaaccgtaaggaag
gataacacttctgctccgatgaccacaagatcatcaaatagctcatcttttatgatgtca
aagggcagaaatgtcactggtaacgagaacaatcgagtaaaagatgaagagcgtaatcta
agatcaagtgctaaaagtccaggcacctcgtcaagctatcatgagggtggggttgagtac
actttaccaacggatgggatcaagccgcaaagtcttgtgcgtagtttagacagtgtctct
attaatgatagaggtggcactggaaaaggtgcttctcaggggcagtataaacctgaaaaa
tggatgcttcctgaagcagaagatggcttattgagtcagctgaatcttgccattgtgggg
catgttgattctgggaaatcaacactttcaggtagacttctgcacctgttgggacgaata
tctcaaaagcagatgcacaagcatgaaaaagaggccaaactagagggcaaggggtccttt
gcttatgcttgggcattggatgagagcccagaggaaagggaaaggggaataaccatgaca
gtggcagttgcttattttgataccaaanaatatcgtgttgttgtgctggactccccaggg
cataaggattttgttccgaacatgatatcaggagccacacaagctgatgccgcattgctc
gtcattgatgcgtccattggttcttttgaagttggcatggatggtagtaagggccaaact
aaagagcatgcacagcttatcagaagctttggagtagatcaacttattgttgcagttaat
aaaatggacgtcgtggagtactcaaaggatagattcgatttgatcaaacagcaacttgga
acattcctccggtctagcggttttagggactcatcggtatgttggatccctctgagtgcc
atggaaaatcaaaatctggtcacagctccttcagacgttcgtttactatcctggtataag
ggaccatacttgttggatgctattgactccctccaacctctaacgagggatgttttgaaa
cctctagtcatgcccatatgtgatgttattaaatcaccttcgatgggtcaggtctctgct
tgtggtaaattggaagctggagctcttcgaagtggagtgaaggttcttgtcatgccatca
ggggatgtggggacagtcaagtctttggaacgtgactctcgcccatgtgcaatcgcgaga
gctggggataatgttgctgtggttcttcagggaattgatacaagcaaagtgatatctggc
ngggtcctttgtcaccccgatttccccatttccattgcaacgcatctggagctgaaagtg
ctcgtcttggatggtgcttcccccattctgatcggttctcagttggaatttcatattcac
catgcaaaggaagctgcgagagttgaaaaaatggtgtcattgctcgatcctaagactggc
aaggtgatgaagaaagccccacggtgtctccttgcaaagcagaaggcagttattgaggtg
gttttgcaaggaccagtttgtgcagaagagttttcgagctgtaaagctctcggaagggtc
tccttaagagcactggggagaactattgctgtaggaattgtcactcaagtaattgagaaa
gagccatag
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