Eucalyptus grandis (rose gum): 120293536
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Entry
120293536 CDS
T03547
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120293536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
120293536
03041 Spliceosome [BR:
egr03041
]
120293536
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120293536
Spliceosome [BR:
egr03041
]
Complex B
Other components
Prp19-related factors
120293536
Complex C
120293536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
120293536
NCBI-ProteinID:
XP_039169095
LinkDB
All DBs
Position
5:complement(49757209..49762428)
Genome browser
AA seq
921 aa
AA seq
DB search
MSIPKELYLSQDDLLYEEELLRNPFSLKLWWRYLIARADSPFKKRFVIYERALKALPGSY
KLWHAYLRERLEIVRSLPITHSQYETLDNTFERALVTMHKMPRIWIMYLQTLTVQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGMPIETPLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLASVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDVFEEGMKTVITVRDFSVIFDAYAQFEESML
GIKMENMDLSDEDEEEGEEGENGVQENGFEEDEDIRLDVNLSQSKFEKKILDGFWLHDDK
DVDLRLARLENLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTV
DPMKAVGKPHTLWVAFAKLYESHNDIANARVIFDKAVQVNYKAVDHLASIWCEWAEMELS
HNNFKKALELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLES
TRAVYERILDLRIATPQIIINYAVLLEDNRYFEDAFKVYERGVKIFKYPHVKDIWVTYLS
KFVRRYGKTKLERARELFEHAIETTPSDQVKPLYLQYAKLEEEYGLAKRAMKVYDQATKA
VPGNEKLAMYEIYIARAAEIFGVPKTREIYEQAIENGGLPDKDGKAMCLKYAELEKSLGE
IDRARGIYVYASQFADPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFI
LPEYVMQKDQKMDLDDARDKLKQAGVSEDEMAALERQLAPSANDVTTKEASRKVGFVSAG
VESQADGGLRSNVNNEDIELPDESDSEEEDKVEIAQKEVPSAVFGGLVRKREDTEKEEEG
KDGESRLGALERIKRLKKASG
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatacccaaggagctgtacctgtcgcaggacgacctgctctacgaggaggagctc
ctgcgcaaccccttcagcctcaagctgtggtggcgctacctcatcgcccgggccgattcc
cctttcaagaagcgcttcgtcatctacgagcgcgccctcaaggccctccccggcagctac
aagctctggcacgcctacctccgcgagcgcctcgagatcgtccggagcctccccatcacc
cactcccagtacgagaccctggacaacacgttcgagcgtgccctggtgacgatgcacaag
atgccccggatttggatcatgtacctccagaccctcacggtgcagaagctggtcacccgc
acccggcggaccttcgaccgggcgctctgcgcgctccccgtcacgcagcacgaccgtatc
tgggagccctacctggtgttcgtcagccagaggggcatgcctatcgagactccgctcaga
gtttacaggaggtacttgaagtatgaccccacccacattgaggatttcattgagttcttg
attaattcgagtctgtggcaagaggcggcggagaggctggcgtcggtgctgaacgacgat
cagttcttctcgattaagggtaagaccaagcataggttgtggctcgagttgtgcgattta
ctcacaaagcatgccacagaggtttctggtcttaatgtcgatgcgattataaggggtggg
attaggaagttcactgatgaggtcgggaggttgtggacgtcccttgctgaatactatatc
aggaggaatttacatgagaaggcgagggacgtatttgaggagggcatgaagacagtgatt
accgtgagagatttcagcgtgatattcgatgcttacgcacagttcgaggagagcatgctt
ggtatcaagatggaaaacatggatctgagtgatgaggatgaggaagagggagaggaggga
gagaatggggtacaggaaaatgggtttgaagaggatgaagatatcaggttggatgtgaat
ttgtcacagtctaagtttgagaagaagatccttgatgggttctggttacacgatgataag
gatgtggatttgaggttagctcgactggagaatttgatggagcgcaggccagaattagca
aatagtgttctcttgcgacaaaatccccataacgtggagcaatggcacaggagggtaaag
ctgtttgagggtaatcccacgaagcagattcttacatacacggaagcagtgaggactgta
gatccaatgaaagctgttggaaaacctcatacactttgggtagcctttgctaaattatac
gagagccacaacgatattgctaatgcgagagtgatatttgacaaagcagtgcaggtcaac
tacaaggccgttgatcatttggccagtatttggtgtgagtgggctgagatggagttgagt
cataacaacttcaaaaaggcacttgagttgatgagaagggctactgcggagccgtcagtt
gaggtcaaaagaagagtggctgctgatgggaatgaaccagttcagatgaagctgcacaaa
tcattgagactgtggacattttatgtggatttggaggagagcctgggtaccttggagtcc
acgcgtgcagtctatgagcgaattttagacttgagaatagccactccccagataattatc
aattatgcagttctgctggaagacaatagatattttgaagatgcatttaaggtatatgaa
agaggtgtcaagatatttaagtatcctcatgtgaaagatatatgggtcacctatctctct
aagtttgtaagaagatatggaaagacgaaactggagcgggcaagagagttgtttgagcat
gctattgaaacgaccccttctgatcaagtaaagcctttgtaccttcaatatgcgaaattg
gaagaggagtatggtcttgcaaagagggcgatgaaggtgtatgatcaagctactaaggcc
gtgccaggcaatgagaagttggcaatgtacgaaatttacatagcacgagcagctgagata
tttggtgtcccaaaaacaagagagatctacgagcaagcgatagaaaatgggggtcttcct
gacaaagatgggaaggctatgtgcttgaaatatgccgagctcgagaaaagcctgggtgaa
atagatcgtgctcgtggaatttacgtgtatgcatcccaattcgctgacccaagatctgat
gttgatttttggaacaagtggcatgaattcgaggtgcagcatgggaatgaagacaccttc
cgagaaatgcttcgaattaagcgcagtgtttctgcaagctatagccagacacacttcatt
ctgcctgagtatgtaatgcaaaaagaccagaagatggatctcgatgacgcaagagacaaa
ttgaagcaggccggcgtttcggaggatgagatggccgctctcgagaggcagcttgcacct
tctgccaatgacgtcacgacgaaagaagcgagccgaaaagttggtttcgtgagtgctgga
gtggaatctcaggcagatggaggtctaagaagtaatgtgaacaacgaggacattgaactg
ccagacgaaagtgactcggaagaagaggataaagttgaaatcgcgcaaaaggaagttccg
tcggcagttttcggagggttggttcggaagagggaagacaccgaaaaggaagaggaaggc
aaggatggcgagagccgtctcggcgccctagagagaattaaaagacttaaaaaagcttcc
ggctga
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